/****************************************************************************
* Copyright (C) 2008 Peter Mortensen and Matthias Mann *
* This file is part of MSQuant. *
* *
* MSQuant is distributed under the terms of *
* the GNU General Public License. See src/COPYING.TXT or *
* <http://www.gnu.org/licenses/gpl.txt> for details. *
* *
* MSQuant is free software; you can redistribute it *
* and/or modify it under the terms of the GNU *
* General Public License as published by the Free *
* Software Foundation; either version 2 of the *
* License, or (at your option) any later version. *
* *
* MSQuant is distributed in the hope that it will be *
* useful, but WITHOUT ANY WARRANTY; without even the *
* implied warranty of MERCHANTABILITY or FITNESS FOR *
* A PARTICULAR PURPOSE. See the GNU General Public *
* License for more details. *
* *
* You should have received a copy of the GNU General *
* Public License along with MSQuant; if not, write to *
* the Free Software Foundation, Inc., 59 Temple *
* Place, Suite 330, Boston, MA 02111-1307 USA *
* *
* Purpose: Holds (static) class AppConstants. See below *
* *
****************************************************************************/
/****************************************************************************
* CEBI *
* Software Development Group *
* Peter Mortensen *
* E-mail: NUKESPAMMERSdrmortensen@get2netZZZZZZ.dk *
* WWW: http://www.cebi.sdu.dk/ *
* *
* Program for post-processing of result from search in mass *
* spectrometric data. *
* *
* FILENAME: MSQuantConstants.cs *
* TYPE: CSHARP *
* *
* CREATED: PM 2008-11-17 Vrs 1.0. Translated from class of the same *
* name, somewhere else. *
* UPDATED: PM 2008-xx-xx *
* *
* *
****************************************************************************/
//Future:
// 1.
//
// 2.
using System.Diagnostics; //For Trace. And its Assert.
//Changed PM_REFACTOR 2008-11-17. Translated to C# and moved to this file.
//Changed PM_REFACTOR 2004-11-23
//****************************************************************************
//* <placeholder for header> *
//****************************************************************************
public class AppConstants
{
//Changed PM_REFACTOR 2008-12-12
public const string SHORT_APP = "MSQ";
public const string LONG_APP = "MSQuant";
public const string APP_HOMEPAGE = "http://msquant.sourceforge.net/";
//Changed PM_MODMATCH_BEGINNING_BUG 2008-12-01
////Changed PM_REFACTOR 2008-12-01. Was in two places.
//public const string MODMATCH_PREFIX = @"\s*(\d*)\s*";
//public const string MODMATCH_PREFIX = @"\s*(\d*)\D*?.*?"; //Match
// forward until the specified match string (from the XML file)
// takes over.
//public const string MODMATCH_PREFIX = @"\s*(\d*)\s*.*?";
//public const string MODMATCH_PREFIX = @"\s*(\d*).*?";
//public const string MODMATCH_PREFIX = @"\s*(\d*)\s*";
public const string MODMATCH_PREFIX = @"\s*(\d*)\s*\w*";
public const string OLD_QUANTMODES_FILENAME =
SHORT_APP + "_quantitationModes.xml";
public const string NEW_QUANTMODES_FILENAME =
"new_" + OLD_QUANTMODES_FILENAME;
//Changed PM_WEAKLY_TYPED_SPECTRUMCLASSIFICATION 2006-02-15
public const string OLD_SPECCLASSIFICATION_FILENAME =
"spectrumClassification.xml";
public const string NEW_SPECCLASSIFICATION_FILENAME =
"new_" + OLD_SPECCLASSIFICATION_FILENAME;
//Changed PM_REFACTOR 2006-06-21
public const string OLD_MISCOPTIONS_FILENAME =
"MiscOptions.xml";
public const string NEW_MISCOPTIONS_FILENAME2 =
"new_" + OLD_MISCOPTIONS_FILENAME;
//Changed PM_LCPEAKDETECTION_OPTIONS 2006-06-21
public const string OLD_CORRSETTINGS_FILENAME =
"MascotParserCorrelationSettings.xml";
public const string NEW_CORRSETTINGS_FILENAME =
"new_" + SHORT_APP + "_correlationSettings.xml";
//Changed PM_COMVERSIONS 2007-07-24
public const string OLD_PARSER_SETTINGS_FILENAME =
"MascotParserOptions.xml";
public const string NEW_PARSER_SETTINGS_FILENAME =
"new_" + SHORT_APP + "_options.xml";
//Changed PM_REFACTOR 2008-08-21
public const string HELPER_APPLICATIONS_TOPFOLDER =
"helper applications";
//Changed PM_HIGHER_LEVEL_PROCESSING 2008-09-02
public const string EXPERIMENT_SETTINGS_FILENAME =
"experimentSettings.xml";
//Older file formats:
// bi9
// bs7
// bs8
// bs9
// mb1
// mb3: as from 2006-12-30
// mb4: as from 2008-11-12
//Use enum for these for better type safety?
//
//Changed PM_MB4_VERSIONING 2008-11-12
public const int SAVEDFILEVERSION_MB3 = 300;
//Public Const SAVEDFILE_FILEEXTENSION_MB3 As String = "mb3"
//Temp... Remove at any time and replace uses with "SAVEDFILEVERSION_MB4".
public const int SAVEDFILEVERSION_MB4TEMP2 = 400;
//Public Const SAVEDFILE_FILEEXTENSION_MB4 As String = "mb4"
public const int SAVEDFILEVERSION_MB4 = 405;
//Public Const SAVEDFILE_FILEEXTENSION_MB4 As String = "mb4"
//Changed PM_SAVE_ALLRECALIB_MB4 2008-11-21
//public const int CURRENT_SAVEDFILEVERSION = SAVEDFILEVERSION_MB4TEMP;
public const int CURRENT_SAVEDFILEVERSION = SAVEDFILEVERSION_MB4;
//Public Const CURRENT_SAVEDFILE_FILEEXTENSION As String = _
// SAVEDFILE_FILEEXTENSION_MB4
//
//Public Const DIALOGXYZ As String = _
// CURRENT_SAVEDFILE_FILEEXTENSION
//Note: instead of const. By could we use shared variables??? (and
// end up only call this function once instead of everytime
// the MB string stuff is needed).
//
// See <http://stackoverflow.com/questions/185384/order-of-static-constructorsinitializers-in-c>
//
//
//Right place??
public struct savedMBfilesInfoStruct
{
public string fileExtension;
//E.g. "mb4"
public string fileExtensionWithDot;
//E.g. ".mb4"
public string dialogFilter;
//E.g. "(*.mb4)|*.mb4"
public string fullDialogFilterSingular;
//E.g. "Binary file (*.mb4)|*.mb4"
public string fullDialogFilterPlural;
//E.g. "Binary files (*.mb4)|*.mb4"
} //savedMBfilesInfoStruct
//Right place??
public static savedMBfilesInfoStruct currentConstantsForSavingMB()
{
return constantsForSavingMB(CURRENT_SAVEDFILEVERSION);
} //currentSavedMBfilesInfo()
//Right place?? Or how about a small helper class to handle
//bookkeeping related to MBx files, e.g. associated strings?
public static savedMBfilesInfoStruct constantsForSavingMB(
int aMBfileVersion)
{
savedMBfilesInfoStruct toReturn = default(savedMBfilesInfoStruct);
toReturn.fileExtension = null; //Keep compiler happy.
toReturn.fileExtensionWithDot = null; //Keep compiler happy.
toReturn.dialogFilter = null; //Keep compiler happy.
toReturn.fullDialogFilterSingular = null; //Keep compiler happy.
toReturn.fullDialogFilterPlural = null; //Keep compiler happy.
switch (aMBfileVersion)
{
case SAVEDFILEVERSION_MB3:
toReturn.fileExtension = "mb3";
break;
case SAVEDFILEVERSION_MB4TEMP2:
toReturn.fileExtension = "mb4temp1";
break;
case SAVEDFILEVERSION_MB4:
toReturn.fileExtension = "mb4";
break;
default:
Trace.Assert(
false, "PIL ASSERT. Select Case never fall-through");
break;
}
toReturn.fileExtensionWithDot = "." + toReturn.fileExtension;
//E.g. "(*.mb4)|*.mb4"
toReturn.dialogFilter =
"(*" + toReturn.fileExtensionWithDot + ")|*" +
toReturn.fileExtensionWithDot + "";
toReturn.fullDialogFilterSingular =
"Binary file " + toReturn.dialogFilter;
toReturn.fullDialogFilterPlural =
"Binary files " + toReturn.dialogFilter;
return toReturn;
} //savedMBConstants()
} //class AppConstants
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