'Purpose of this file: a location for arbitrary notes relating to the project.
'Changed PM_XYZ 2003-02-07
'Changed PM_READONLYFILE_BUG 2003-02-09
'Changed PM_REFACTOR 2003-02-10
'Changed PM_HYSSUPPORT 2003-02-12
'Changed PM_DEADCODE 2003-02-12
'Changed PM_VERSIONFIELD 2003-02-13
'Changed PM_OPTIONEXPLICIT 2003-02-13
'Changed PM_OPTIONSTRICT 2003-02-13
'Changed PM_CASTFOR_OPTIONSTRICT 2003-02-13
'Changed PM_QUANTMODE 2003-02-18
'Changed PM_ERROR_DETECTION_ENUM_START_VALUE 2003-02-19
'Changed PM_VIOLATESENCAPSULATION_MARKER 2003-02-24
'Changed PM_REFACTOR 2003-02-24
'Changed PM_OPTIONEXPLICIT 2003-02-24
'Changed PM_PROTEIN_RATIO 2003-02-26
'Changed PM_XIC 2003-03-07
'Changed PM_XIC 2003-03-09
'Changed PM_XIC 2003-03-10
'Changed PM_EXCELEXPORT 2003-03-11
'Changed PM_REFACTOR 2003-03-11
'Changed PM_LC_CENTROID 2003-03-11
'Changed PM_QUANT_AUTOMATION 2003-03-11
'Changed PM_BATCH_SCREENUPDATE 2003-03-12
'Changed PM_BUG_D0D4_MASCOTCYS 2003-03-12
'Changed PM_EXCELEXPORT 2003-03-12
'Changed PM_EXPORT_QUANTIFIED 2003-03-12
'Changed PM_EXPORT_QUANTIFIED 2003-03-13
'Changed PM_DETECT_PROPER_REGIONALSETTINGS 2003-03-13
'Changed PM_QUANTIFY_FROMFILE 2003-03-13
'Changed PM_LCPEAK_WIDTH 2003-03-14
'Changed PM_LCPEAK_WIDTH 2003-03-15
'Changed PM_STOP_BUG 2003-03-15
'Changed PM_REFACTOR 2003-03-15
'Changed PM_NOISOTOPE_BUG 2003-03-15
'Changed PM_QUANTIFY_FROMFILE_RET_START_AND_END 2003-03-15
'Changed PM_QUANTTHRESHOLD_FROM_50_TO_20 2003-03-16
'Changed PM_PROTEIN_ACC_IN_IMPORT 2003-03-18
'Changed PM_LC_PEAKDETECTION 2003-03-19
'Changed PM_LC_PEAKDETECTION 2003-03-20
'Changed PM_UNCHECK_FALSEPEPTIDES 2003-03-20
'Changed PM_REFACTOR 2003-03-21
'Changed PM_UNCHECK_FALSEPEPTIDES 2003-03-21
'Changed PM_T1_ASSERT 2003-03-24
'Changed PM_LCPEAK_DRAW 2003-03-24
'Changed PM_EXTENDED_LCPEAK_TIMEWINDOW 2003-03-24
'Changed PM_NONUNIFORMSAMPLING_LCCENTROID 2003-03-24
'Changed PM_LCPEAK_DRAW_CLEANUP 2003-03-25
'Changed PM_ACCESSIONNUMBER_IMPORT 2003-03-26
'Changed PM_IMPORT_TROUBLE 2003-03-26
'Changed PM_EXPORT_MAXLC 2003-03-26
'Changed PM_MSWINDOW 2003-03-27
'Changed PM_FULL_LCWINDOW_DISPLAY 2003-03-27
'Changed PM_REFACTOR_FINDPEAK_ 2003-03-30
'Changed PM_AVOID_ARRAYINDEX_OUTOFRANGE 2003-03-31
'Changed PM_MS_QA 2003-03-31
'Changed PM_REFACTOR 2003-04-01
'Changed PM_MS_QA 2003-04-02
'Changed PM_REFACTOR 2003-04-03
'Changed PM_REFACTOR 2003-04-04
'Changed PM_ARG6_AND_ARG10_DISTINCT 2003-04-04
'Changed PM_LYS_13C6 2003-04-04
'Changed PM_LYS_13C6 2003-04-07
'Changed PM_TRIPLE_ENCODING 2003-04-07
'Changed PM_MSZOOM_TO_MAXLC 2003-04-08
'Changed PM_REFACTOR 2003-04-08
'Changed PM_TRIPLE_ENCODING 2003-04-08
'Changed PM_REFACTOR 2003-04-09
'Changed PM_TRIPLE_ENCODING 2003-04-09
'Changed PM_BUGDETECT 2003-04-10
'Changed PM_TRIPLE_ENCODING 2003-04-10
'Changed PM_EXPORT_SPECTRA_VALUES 2003-04-10
'Changed PM_REFACTOR 2003-04-11
'Changed PM_PERSIST_OPTIONS 2003-04-14
'Changed PM_REFACTOR 2003-04-15
'Changed PM_SAVETOFILE 2003-04-15
'Changed PM_PROPER_GOOD_PEAK_INIT 2003-04-16
'Changed PM_EDWIN_ALLPEPTIDES_EXPORT 2003-04-16
'Changed PM_CACHE_CALIBRATED_MASSES 2003-04-16
'Changed PM_REFACTOR 2003-04-16
'Changed PM_MODS_IN_EXPORT 2003-04-16
'Changed PM_MORE_IN_PEPTIDEEXPORT 2003-04-16
'Changed PM_MASCOT1.9_TROUBLE 2003-04-22
'Changed PM_ARG6_LYS6 2003-04-23
'Changed PM_ACCEPTNEXTPROTEIN_CRASH 2003-04-23
'Changed PM_KILL_GLOBALS 2003-04-25
'Changed PM_KILL_GLOBALS 2003-04-29
'Changed PM_NOUNCHECKED_IN_EXPORT 2003-05-05
'Changed PM_EXPORTQUANTIFIED_BUG 2003-05-05
'Changed PM_DRAWLCPEAK_CRASH 2003-05-06
'Changed PM_REFACTOR 2003-05-06
'Changed PM_REFACTOR 2003-05-07
'Changed PM_MANUAL_PEPTIDEQUANTSTATUSUPDATE 2003-05-06
'Changed PM_BROKEN_EXPORT_IN_QUANTWINDOW 2003-05-09
'Changed PM_TRIPLEDISPLAY 2003-06-17
'Changed PM_TRIPLEDISPLAY 2003-06-18
'Changed PM_TRIPLEDISPLAY_PERFORMANCETROUBLE 2003-06-19
'Changed PM_TRIPLEDISPLAY_EXPORT 2003-06-20
'Changed PM_TRIPLEDISPLAY_COLOURHIGHER 2003-06-20
'Changed PM_TRIPLEDISPLAY_COLUMNCOLOUR 2003-06-23
'Changed PM_TRIPLEDISPLAY_MORE_PERFORMANCETROUBLE 2003-06-23
'Changed PM_TRIPLEDISPLAY_PERFORMANCETROUBLE 2003-06-24
'Changed PM_KEEP_HIGHEST_FOR_RATIOS 2003-06-25
'Changed PM_KEEP_HIGHEST_FOR_RATIOS 2003-06-26
'Changed PM_COUNTRULE_FOR_ALL_ISOTOPES 2003-06-26
'Changed PM_PROTEIN_RATIOS 2003-06-27
'Changed PM_REFACTOR_FINNEGAN 2003-06-02
'Changed PM_REFACTOR_FINNEGAN 2003-07-06
'Changed PM_REFACTOR_FINNEGAN 2003-07-10
'Changed PM_REFACTOR_FINNEGAN_MARKER 2003-07-12
'Changed PM_REFACTOR_FINNEGAN 2003-07-13
'Changed PM_REFACTOR_FINNEGAN 2003-07-16
'Changed PM_REFACTOR_FINNEGAN 2003-07-21
'Changed PM_REFACTOR_FINNEGAN 2003-07-25
'Changed PM_BACK_TO_ANALYST 2003-07-28
'Changed PM_BACK_TO_NORMAL 2003-07-29
'Changed PM_SQLCOMMON_CHANGE 2003-07-31
'Changed PM_BACK_TO_NORMAL 2003-07-31
'Changed PM_PROTEINS_CHECK_SQL_PROBLEM 2003-08-04
'Changed PM_NO_OFF_BY_OPENPROTEINWINDOW 2003-08-04
'Changed PM_DEFINDED_MASCOT_SORT_ORDER 2003-08-04
'Changed PM_DEFINDED_MASCOT_SORT_ORDER 2003-08-05
'Changed PM_MVC_QUANTIFY 2003-08-06
'Changed PM_MVC_QUANTIFY 2003-08-07
'Changed PM_QUANTSPEEDUP 2003-08-07
'Changed PM_REFACTOR 2003-08-08
'Changed PM_REFACTOR 2003-08-11
'Changed PM_RAIO_PROBLEM 2003-08-11
'Changed PM_SPECTRUM_LINES_UPDATE 2003-08-12
'Changed PM_DEBUG_EVENTCOUNTS 2003-08-12
'Changed PM_REFACTOR 2003-08-12
'Changed PM_EVENTTROUBLE 2003-08-13
'Changed PM_RERELASE 2003-08-14
'Changed PM_CALIBRATION_TROUBLE 2003-08-14
'Changed PM_PROTEINCHECK_SQL 2003-08-15
'Changed PM_MSMS_DISPLAY_BROKEN 2003-08-15
'Changed PM_REFACTOR_FINNEGAN_MSMS 2003-08-18
'Changed PM_FUTURE_ASSERT_MARK 2003-08-18
'Changed PM_REFACTOR_FINNEGAN 2003-08-18
'Changed PM_FINNEGAN_RAWFILEMODE 2003-08-18
'Changed PM_MARKET_ANALYSTSP7 2003-08-20
'Changed PM_EXPERIEMTN_ASSERT 2003-08-20
'Changed PM_FINNEGAN_RAWFILEMODE 2003-08-20
'Changed PM_REFACTOR_FINNEGAN 2003-08-21
'Changed PM_AVOID_ASSERTS 2003-08-21
'Changed PM_ASSERT_BEFORE_RUNTIMEERROR 2003-08-22
'Changed PM_ANALYST_BACKINBUSINESS 2003-08-22
'Changed PM_DTA_PERL_INTERPRET 2003-08-22
'Changed PM_SEVERALWIFFS_MARKER 2003-08-22
'Changed PM_REFACTOR 2003-08-26
'Changed PM_SEVERALWIFFS 2003-08-26
'Changed PM_SEVERALWIFFS 2003-08-27
'Changed PM_SEVERALWIFFS_BACKCOMPATIBILITY 2003-08-28
'Changed PM_SEVERALWIFFS_BUGFIX 2003-08-28
'Changed PM_CORR_RETENTIONTIME 2003-09-10
'Changed PM_CORR_RETENTIONTIME 2003-09-11
'Changed PM_TRIPLEENC_QUANTEXCLUDE 2003-09-15
'Changed PM_ACCEPTEDQUANT_ONLYIN_LCWINDOW 2003-09-18
'Changed PM_REFACTOR 2003-09-23
'Changed PM_EXPORT_SEQUENCE_WITH_MODS 2003-09-24
'Changed PM_CORR_RETENTIONTIME_DESTINCT_CHARGEANDMASS 2003-09-24
'Changed PM_REFACTOR 2003-09-25
'Changed PM_CORR_ADD_EVEN_MORE_PEPTIDES 2003-09-25
'Changed PM_BADPEAKREASON_BUG 2003-09-26
'Changed PM_FASTER_EXPORT 2003-09-26
'Changed PM_EXPORTQUANTIFIED_ASSERT 2003-09-29
'Changed PM_STOP_AQUISITION 2003-09-29
'Changed PM_QUANTMODESTR_DISPLAY 2003-09-29
'Changed PM_LCWINDOW_CHECK_ERROR 2003-09-30
'Changed PM_NEW_LCRANGE_FOR_INSERTED_PEPTIDES 2003-09-30
'Changed PM_MAXWT_USEDFORQUANT 2003-10-01
'Changed PM_MS_QA_ARITOVERFLOW 2003-10-02
'Changed PM_CORR_MODS_FOR_INSERTED 2003-10-03
'Changed PM_DLL_VERSIONING_CHECK_PEPTIDEHITSTRUCTURE 2003-10-08
'Changed PM_NOMODS_MASS 2003-10-08
'Changed PM_EXPORT_SEQ_WITHMODS 2003-10-08
'Changed PM_CORR_CHECKEDINHERIT_FOR_INSERTED 2003-10-08
'Changed PM_CORR_SORTBYSEQUENCE 2003-10-08
'Changed PM_REFACTOR 2003-10-08
'Changed PM_CYCLENUMBER_IN_SPECTRUM 2003-10-08
'Changed PM_REFACTOR_GLOBALS 2003-10-09
'Changed PM_VERY_SERIOUS_PARSING_BUG 2003-10-09
'Changed PM_EXPORT_LCTIME_FOR_MAXCHECKED 2003-10-10
'Changed PM_LCPROFILE_CRASH 2003-10-13
'Changed PM_REFACTOR 2003-10-13
'Changed PM_AVOID_EXCEPTION_FILE_NOT_EXIST 2003-10-14
'Changed PM_REFACTOR 2003-10-14
'Changed PM_REFACTOR_INSERT_NATIVEPEPTIDE 2003-10-15
'Changed PM_HIGHERLOWER_ASSERT 2003-10-15
'Changed PM_MISSINGS_OBJECT_EXCEPTION_SPECS 2003-10-16
'Changed PM_NEGATIVE_RETENTION_TIMES 2003-10-16
'Changed PM_BETTER_LCPEAK_DETECTION 2003-10-16
'Changed PM_NOOPTIONS_FILE_ASSERT 2003-10-18
'Changed PM_FEW_PEPTIDES_FOR_QUANTITATION 2003-10-20
'Changed PM_ARG6ARG10_ASSERT 2003-10-20
'Changed PM_REFACTOR 2003-10-21
'Changed PM_CORRELATION_DIALOG 2003-10-21
'Changed PM_DISABLE_FINNEGAN_MSMSTIME_PATCHING 2003-10-21
'Changed PM_FINNEGAN_BAD_LCPEAK_WINDOW 2003-10-21
'Changed PM_ISOTOPE_QUANT_TOO_PERMISSIVE 2003-10-21
'Changed PM_LCPEAKDETECT_IGNORE_ZERO_FOR_BACKGROUND 2003-10-21
'Changed PM_FINNEGAN_SOMEMS_AS_MSMS 2003-10-21
'Changed PM_FINNEGAN_DISPLAY_TRYOUT 2003-10-23
'Changed PM_FINNEGAN_DISPLAY 2003-10-23
'Changed PM_FINNEGAN_PPM_ERROR 2003-10-24
'Changed PM_SPECTRUM_ZOOM_WINDOW 2003-10-27
'Changed PM_REFACTOR 2003-10-27
'Changed PM_DLL_CHECK_PEPTIDEHITSTRUCTURE 2003-10-28
'Changed PM_FINNEGAN_PPM_ERROR 2003-10-28
'Changed PM_FINNEGAN_PPM_ERROR 2003-10-29
'Changed PM_REFACTOR 2003-10-29
'Changed PM_INSERTED_QUERYNUMBER 2003-10-29
'Changed PM_BAD_INSERT 2003-10-29
'Changed PM_CURSOR_EMBED 2003-10-31
'Changed PM_SUPERCHARGE 2003-11-03
'Changed PM_NO_APPENDTOFILE 2003-11-04
'Changed PM_PEPT_RAWFILE_PATH 2003-11-05
'Changed PM_REFACTOR 2003-11-05
'Changed PM_BAD_INSERT 2003-11-07
'Changed PM_HTMLRESULTFILE_SIZECHECK 2003-11-11
'Changed PM_CYS_TROUBLE 2003-11-14
'Changed PM_LCPROFILE_DUMP 2003-11-16
'Changed PM_CURSOR_CRASH 2003-11-16
'Changed PM_MARK_EXTERNAL_QUANT 2003-11-18
'Changed PM_RET_OVERWRITE 2003-11-18
'Changed PM_FINNEGAN_RETENTION_TIME 2003-11-18
'Changed PM_FINNEGAN_RETENTION_TIME 2003-11-20
'Changed PM_CYS_TROUBLE 2003-11-20
'Changed PM_REFACTOR 2003-11-21
'Changed PM_EARLY_PATCHING_RETENTION_TIME 2003-11-21
'Changed PM_SPECTRUM_ZOOM_WINDOW 2003-11-24
'Changed PM_REFACTOR 2003-11-25
'Changed PM_TRIPLE_LYSINE 2003-11-25
'Changed PM_TRIPLE_LYSINE 2003-11-26
'Changed PM_VARIABLE_XIC_WINDOW 2003-11-27
'Changed PM_REFACTOR 2003-12-01
'Changed PM_TRIPLE_LYSINE 2003-12-01
'Changed PM_TRIPLE_LYSINE_MATCH_PROBLEM 2003-12-01
'Changed PM_MOD_MATCH_PROBLEM 2003-12-01
'Changed PM_IRINA_SAMPLE_NUMBER_TROUBLE 2003-12-02
'Changed PM_EXTERNAL_QUANT_BROKEN 2003-12-02
'Changed PM_CHECK_ALL_AAS_MODIFIED 2003-12-03
'Changed PM_GENERALISED_QUANT_MODE 2003-12-04
'Changed PM_GENERALISED_QUANT_MODE 2003-12-05
'Changed PM_GENERALISED_QUANT_MODE 2003-12-06
'Changed PM_GENERALISED_QUANT_MODE 2003-12-07
'Changed PM_MARKER 2003-12-07
'Changed PM_GENERALISED_QUANT_MODE_COUNTERDISABLE 2003-12-08
'Changed PM_GENERALISED_QUANT_MODE_OLDMODHIT_MARKER 2003-12-08
'Changed PM_GENERALISED_QUANT_MODE_MODLOCATION_MARKER 2003-12-08
'Changed PM_MARKER 2003-12-08
'Changed PM_GENERALISED_QUANT_MODE 2003-12-08
'Changed PM_GENERALISED_QUANT_MODE_TEMP_OPTIONS_LOAD_DISABLE 2003-12-08
'Changed PM_GENERALISED_QUANT_MODE 2003-12-09
'Changed PM_HEAVY_LYS_TRIPLEENCODING_QUANTMODE 2003-12-09
'Changed PM_GENERALISED_QUANT_MODE 2003-12-10
'Changed PM_GENERALISED_QUANT_MODE 2003-12-11
'Changed PM_MARKER_ADDITIVE_QUANTS 2003-12-11
'Changed PM_LEUD3_REARRANGE 2003-12-11
'Changed PM_LOAD_OPTIONS_AGAIN 2003-12-11
'Changed PM_REFACTOR 2003-12-12
'Changed PM_LOAD_OPTIONS_AGAIN 2003-12-12
'Changed PM_MULTIPLE_FINNEGAN_FIX 2003-12-12
'Changed PM_DOUBLE_OFFCLICK 2003-12-16
'Changed PM_REFACTOR 2003-12-16
'Changed PM_REFACTOR 2003-12-17
'Changed PM_LC_TIMERANGE 2003-12-17
'Changed PM_JA_FINNEGAN_ASSERT 2003-12-17
'Changed PM_JA_FINNEGAN_ASSERT_RESOURCE_LEAK 2003-12-17
'Changed PM_ANALYST_OPENFINNEGANWINDOW_BUG 2003-12-18
'Changed PM_LCPEAK_WINDOW_USERDEFINED 2003-12-18
'Changed PM_JA_FINNEGAN_ASSERT_RESOURCE_LEAK 2003-12-19
'Changed PM_FINNEGAN_COUNT_THRESHOLD 2003-12-19
'Changed PM_FINNEGAN_COUNT_THRESHOLD 2003-12-22
'Changed PM_SIM_SCAN_MS 2003-12-22
'Changed PM_QUANT_MODE_REORG 2004-01-05
'Changed PM_MULTIPLE_FINNEGAN_TROUBLE 2004-01-06
'Changed PM_MULTIPLE_FINNEGAN_TROUBLE_EXTREME_SLOWDOWN 2004-01-06
'Changed PM_HANDLE_LEAK_WORKAROUND 2004-01-06
'Changed PM_MARKER_FINDPEAK 2004-01-07
'Changed PM_RESOURCE_LEAK 2004-01-15
'Changed PM_QUANT_ORDER 2004-01-18
'Changed PM_MULTIPLE_FINNEGAN_TROUBLE 2004-01-18
'Changed PM_ZOOMSCAN_TROUBLE 2004-01-21
'Changed PM_INSTALLER 2004-01-23
'Changed PM_RAWFILE_CASESENSITIVITY 2004-01-26
'Changed PM_ASSOC_UPPEREXT_ERRMSG 2004-01-26
'Changed PM_INSERTEDPEPTIDES_LCWINDOW_TROUBLE 2004-01-26
'Changed PM_LYSD4_QUANTMODE 2004-01-27
'Changed PM_NOMULTIPLE_ASSERT 2004-01-28
'Changed PM_OPTIONSFILES_ONLYINBIN 2004-01-28
'Changed PM_EXTERNAL_QUANTDEFS 2004-01-28
'Changed PM_REFACTOR 2004-02-02
'Changed PM_LCPEAK_MSMSEVENT 2004-02-02
'Changed PM_REFACTOR 2004-02-04
'Changed PM_PROTEINRATIO_DISPLAY 2004-02-04
'Changed PM_PROTEINRATIO_EXPORT 2004-02-04
'Changed PM_FINNEGAN_MSMS_DISPLAY 2004-02-04
'Changed PM_FINNEGAN_SPECTRUMLABEL_TRYOUT 2004-02-05
'Changed PM_REFACTOR 2004-02-05
'Changed PM_USE_DEFAULT_OPTIONS_BUG 2004-02-09
'Changed PM_NO_FUEL_LEFT 2004-02-10
'Changed PM_TOO_FEW_INSERTED_WAS_OUTLIER_COLUMN_REJECT 2004-02-10
'Changed PM_PRESELECTED_THRESHOLD_GREATERTHAN 2004-02-10
'Changed PM_CORR_CONTINUE_AND_REPORT 2004-02-10
'Changed PM_CORR_CONTINUE_AND_REPORT 2004-02-11
'Changed PM_CORR_CONTINUE_AND_REPORT 2004-02-16
'Changed PM_TRUE_SPECTRUM_EMBEDDING 2004-02-16
'Changed PM_TRUE_SPECTRUM_EMBEDDING 2004-02-17
'Changed PM_QUANTMODES_VERSIONING 2004-02-17
'Changed JWG_MICROMASS_COUNT_THRESHOLD 2004-02-18
'Changed PM_QUANTMODES_VERSIONING 2004-02-19
'Changed PM_CASESTATEMENT_FOR_RAWFILETYPE 2004-02-22
'Changed PM_HYSTAG_SUPPORT 2004-03-01
'Changed PM_MASCOT2_SUPPORT 2004-03-01
'Changed PM_MASCOT2_SUPPORT 2004-03-03
'Changed PM_MASCOT2_SUPPORT_FINNEGANSPECTRUMNUMBER_TROUBLE 2004-03-16
'Changed PM_MASCOT2_SUPPORT_MASCOT1XDESCR_TROUBLE 2004-03-16
'Changed PM_REFACTOR 2004-03-16
'Changed PM_MASCOT2_ZOOMSCAN_QUANT_FILTER 2004-03-16
'Changed PM_MICROMASS_DISABLE 2004-03-17
'Changed PM_EMPTY_AA_TAGS 2004-03-18
'Changed PM_OPTIONSDIALOG_PROBLEM_AFTER_QUANTSPECCHANGE 2004-03-19
'Changed PM_XIC_ISOTOPES 2004-03-19
'Changed PM_REMOVE_FINNEGAN_DEPENDENCY 2004-03-19
'Changed PM_MEMORY_PROBLEM 2004-04-05
'Changed PM_MASCOT2_SUPPORT_MEMORYTROUBLE 2004-04-05
'Changed PM_PARSE_TOOLTIP_MESSAGE 2004-04-05
'Changed PM_REFACTOR 2004-04-06
'Changed PM_PARSE_CHUNKED 2004-04-06
'Changed PM_PARSE_CHUNKED 2004-04-07
'Changed PM_CHUNKER_INIT 2004-04-07
'Changed PM_MS3_DTASUPERCHARGE 2004-04-13
'Changed PM_PARSE_CHUNKED 2004-04-13
'Changed PM_MEMORY_PROBLEM 2004-04-13
'Changed PM_MEMORY_PROBLEM_NOSPLITS 2004-04-13
'Changed PM_REFACTOR 2004-04-14
'Changed PM_MEMORY_PROBLEM 2004-04-14
'Changed PM_REFACTOR 2004-04-15
'Changed PM_MS3_DTASUPERCHARGE 2004-04-15
'Changed PM_CLOSEWARNING 2004-04-21
'Changed PM_PERFORMANCE 2004-04-23
'Changed PM_FINNEGANFORM_NOSHOW 2004-05-04
'Changed PM_MOUSE_IS_BAD 2004-05-04
'Changed PM_FINNEGAN_LABELS 2004-05-04
'Changed PM_FINNEGAN_LABELS 2004-05-06
'Changed PM_MORE_MS3_DTASUPERCHARGE 2004-05-10
'Changed PM_FINNEGAN_DISPLAY_ASSERT_BUG 2004-05-10
'Changed PM_JA_TROUBLE 2004-05-11
'Changed PM_MS3INTEGRATION 2004-05-12
'Changed PM_MORE_JA_TROUBLE 2004-05-13
'Changed PM_REFACTOR 2004-05-13
'Changed PM_MS3INTEGRATION 2004-05-13
'Changed PM_MS3INTEGRATION 2004-05-14
'Changed JWG_MICROMASS_RE-ENABLE 2004-06-01
'Changed PM_MARKER 2004-06-01
'Changed PM_MANUALLCSELECT_EXCEPTION 2004-06-01
'Changed PM_MORE_FINNEGAN_DISPLAY_TROUBLE 2004-06-01
'Changed PM_MS3INTEGRATION 2004-06-02
'Changed PM_REFACTOR 2004-06-03
'Changed PM_SUB_PPM 2004-06-03
'Changed PM_MS3INTEGRATION 2004-06-03
'Changed PM_MS3INTEGRATION 2004-06-07
'Changed PM_AVERAGE_OF_RATIOS_PROBLEM 2004-06-09
'Changed PM_REFACTOR 2004-06-10
'Changed PM_FINNEGAN_QUANT_MARKERS 2004-06-10
'Changed PM_AVERAGE_OF_RATIOS_PROBLEM 2004-06-14
'Changed PM_ZZZZZ_MS3SCORE 2004-06-15
'Changed PM_PROGRESS_NOT_RESET 2004-06-15
'Changed PM_MS3INTEGRATION 2004-06-15
'Changed PM_ACCEPT_LONG_STRETCH_OF_MS_SPECTRA 2004-06-15
'Changed PM_NEWMASCOT2_FORMAT 2004-06-17
'Changed PM_REFACTOR 2004-06-17
'Changed PM_ZOOM_MARKERS 2004-06-17
'Changed PM_MARKER 2004-06-18
'Changed PM_IGNORE_ZEROS_IN_LCPROFILE_ 2004-06-18
'Changed PM_IGNORE_ZEROS_IN_LCPROFILE_ 2004-06-21
'Changed PM_PRESELECTEDVALIDATED_CONDITIONS 2004-06-21
'Changed PM_TRAILING_LCPOINTS_LEFTOUT 2004-06-22
'Changed PM_REFACTOR 2004-06-22
'Changed PM_IGNORE_ZEROS_IN_LCPROFILE_ 2004-06-23
'Changed PM_DUMP_PERFORMANCE_MARKER 2004-06-25
'Changed PM_FINNIGAN_OUTSIDE_SPECTRUMRANGE 2004-06-25
'Changed PM_PEAKFIND_MAXFINDDISTANCE 2004-06-25
'Changed PM_FINNIGAN_SPEEDUP 2004-06-25
'Changed PM_VARIABLE_XIC_WINDOW_INSTRUMENTSPECIFIC 2004-06-29
'Changed PM_REFACTOR 2004-06-30
'Changed PM_INSERTION_OF_Z_PEPTIDES 2004-06-30
'Changed PM_QUANTSPECTRUM_INFO 2004-07-06
'Changed PM_WORK_ON_SELECTION 2004-07-06
'Changed PM_REFACTOR 2004-07-07
'Changed PM_SEQUENCE_DEPENDENT_QUANTMASSDIFF 2004-07-07
'Changed PM_SEQUENCE_DEPENDENT_QUANTMASSDIFF 2004-07-08
'Changed PM_BETTER_ZOOM 2004-07-08
'Changed PM_WORK_ON_SELECTION 2004-07-08
'Changed PM_REFACTOR 2004-07-15
'Changed PM_ARRIVED_LAST_PROTEIN_BUG 2004-07-15
'Changed PM_SEQUENCE_DEPENDENT_QUANTMASSDIFF_BUGS 2004-07-15
'Changed PM_REFACTOR 2004-07-17
'Changed PM_LCPROFILE_ALSO_WHEN_NO_RATIO 2004-07-17
'Changed PM_LCMAX_PROBLEM 2004-07-17
'Changed PM_MICROMASS_ENABLE 2004-07-19
'Changed PM_REFERENCES 2004-07-20
'Changed PM_MEMORY_ALLOCATION_TEST 2004-07-26
'Changed PM_MEMORY_ALLOCATION 2004-07-26
'Changed PM_REFACTOR 2004-07-27
'Changed PM_MEMORY_ALLOCATION 2004-07-27
'Changed PM_CLRPROFILER_PROBLEMS 2004-07-28
'Changed PM_MARKER_MEMORY_ALLOCATION 2004-07-28
'Changed PM_MEMORY_ALLOCATION 2004-07-29
'Changed PM_MEMORY_ALLOCATION_MODMATCHSTR 2004-07-29
'Changed PM_REFACTOR 2004-07-30
'Changed PM_MISSING_STATE_CHANGE_INDICATION 2004-07-30
'Changed PM_MARKER_MEMORY_ALLOCATION 2004-07-30
'Changed PM_MEMORY_ALLOCATION 2004-07-30
'Changed PM_MEMORY_ALLOCATION 2004-07-31
'Changed PM_MEMORY_ALLOCATION 2004-08-01
'Changed PM_MEMORY_ALLOCATION 2004-08-02
'Changed PM_EXPORT_SPECTRUMNUBMER_AND_RT 2004-08-02
'Changed PM_MEMORY_ALLOCATION_MORE_THAN_ONE_SECTION 2004-08-02
'Changed PM_MEMORY_ALLOCATION 2004-08-03
'Changed PM_REFACTOR 2004-08-04
'Changed PM_PROTEIN_OVERWRITE_BUG 2004-08-04
'Changed PM_MEMORY_ALLOCATION 2004-08-05
'Changed PM_REFACTOR 2004-08-05
'Changed PM_MEMORY_ALLOCATION 2004-08-06
'Changed PM_CONSISTENCY 2004-08-06
'Changed PM_DONT_PANIC 2004-08-26
'Changed PM_MODIFICATIONS_FOR_NOISOTOPE 2004-08-26
'Changed PM_FINNIGAN_MEMORY_WORKAROUND 2004-08-30
'Changed PM_FINNIGAN_MEMORY_WORKAROUND 2004-08-31
'Changed PM_FINNIGAN_MEMORY_WORKAROUND 2004-09-01
'Changed PM_REFACTOR 2004-09-06
'Changed PM_REFACTOR 2004-09-07
'Changed PM_MORE_MEMORY_WORKAROUND 2004-09-07
'Changed PM_MSTYPES_FOR_QUANT_OPTION 2004-09-13
'Changed PM_SAVING_OPTIONS 2004-09-14
'Changed PM_SAVING_OPTIONS 2004-09-15
'Changed PM_PM_MEMORY_ALLOCATION 2004-09-23
'Changed PM_PM_MEMORY_ALLOCATION 2004-09-27
'Changed PM_RESETTING_ALL_QUANTFIELDS 2004-10-05
'Changed PM_DTASC_MEMORY 2004-10-15
'Changed PM_RETENTIONTIME_ASSERT 2004-10-25
'Changed PM_EXCLUDE_NONPRESELECTED 2004-10-25
'Changed PM_MS3SCORING_ONLYVALIDATEDPEPTIDES 2004-10-25
'Changed PM_DEFAULT_SAVENAME 2004-10-27
'Changed PM_DATAPOINT_THRESHOLD_ZERO 2004-10-27
'Changed PM_SMARTPICKING_FIX 2004-10-27
'Changed PM_MS3SCORING_USEPEAKS 2004-10-27
'Changed PM_MS3SCORING_HIGHN_ZERO 2004-10-27
'Changed PM_CENTERSPECTRIMLINE_QUANTWINDOW 2004-11-02
'Changed PM_VISUAL_NOISE 2004-11-08
'Changed PM_NOT_MS3_SCORED 2004-11-08
'Changed PM_ALWAYS_DISPLAY_FIRST_PEPTIDE 2004-11-10
'Changed PM_EXPORT_ALL_PEPTIDE_INFORMATION 2004-11-16
'Changed PM_QUANTITATE_NEXTPROTEIN 2004-11-16
'Changed PM_REFACTOR 2004-11-16
'Changed PM_FEWER_FOR_QUANT 2004-11-17
'Changed PM_ONLYINSERT_FOR_QUANTIFIABLE 2004-11-23
'Changed PM_INHERIT_MODS_FOR_INSERTED 2004-11-23
'Changed PM_EXTRA_EXPORT 2004-11-23
'Changed PM_REFACTOR 2004-11-23
'Changed PM_REFACTOR 2004-11-24
'Changed PM_FRAGMENTS_FOR_INSERTED 2004-11-24
'Changed PM_INSERTED_FALSENEGATIVE 2004-11-25
'Changed PM_FRAGMENTS_FOR_INSERTED 2004-11-25
'Changed M_UNDEFINED_EXPERIMENTNUMBER 2004-11-29
'Changed PM_FRAGMENTS_FOR_INSERTED 2004-11-29
'Changed PM_NOISOTOPE_BROKEN 2004-11-29
'Changed PM_MODIFICATION_FILTER 2004-12-07
'Changed PM_PARSEERROR_HANDLING 2004-12-13
'Changed PM_REFACTOR 2004-12-13
'Changed PM_RECALIB_MODIFIEDPEPTIDES 2004-12-13
'Changed PM_PARSEERROR_HANDLING 2004-12-14
'Changed PM_STRING_CLEANUP 2004-12-14
'Changed PM_REFACTOR 2005-01-05
'Changed PM_XY_EXPORT 2005-01-05
'Changed PM_XY_EXPORT 2005-01-07
'Changed PM_XY_EXPORT 2005-01-10
'Changed PM_REFACTOR 2005-01-11
'Changed PM_XY_EXPORT 2005-01-11
'Changed PM_XY_EXPORT 2005-01-19
'Changed PM_RAWFILE_RESET 2005-01-19
'Changed PM_MS3_EXPORT 2005-01-20
'Changed PM_REFACTOR 2005-01-20
'Changed PM_CENTROIDEDDATA_PEAKDETECTION 2005-01-21
'Changed PM_MS3SCORING_LOWER_CATCHDISTANCE 2005-01-21
'Changed PM_MS3SCORING_ISOTOPE_ELIMINATION 2005-01-21
'Changed PM_REFACTOR 2005-01-25
'Changed PM_MS3_EXPORT 2005-01-25
'Changed PM_REFACTOR 2005-01-26
'Changed PM_BAD_FRAGMENT_CHARGE 2005-01-26
'Changed PM_MS3_SCORE_ORDER 2005-01-26
'Changed PM_PROPER_PRECURSOR_CHARGE 2005-01-26
'Changed PM_FASTER_SPECTRUM_LABELS 2005-01-27
'Changed PM_SAVE_RECALIBRATION 2005-01-27
'Changed PM_SAVE_RECALIBRATION 2005-02-02
'Changed PM_REFACTOR 2005-02-02
'Changed PM_QUANTWINDOW_VISUALISATION 2005-02-02
'Changed PM_NO_NAKEDSEQUENCE 2005-02-03
'Changed PM_NEXTQUANTPEPTIDE_TROUBLE 2005-02-04
'Changed PM_SELECTION_INDEPENDENT 2005-02-04
'Changed PM_ANALYST_MARKERS 2005-02-10
'Changed PM_ANALYST_INVALIDNUMBEROFPARAMETERS 2005-02-10
'Changed PM_MARKERS_MASS_IN_TOOLTIPS 2005-02-10
'Changed PM_ZAP_SPECS 2005-02-17
'Changed PM_NOP_CHECKED 2005-02-17
'Changed PM_REFACTOR 2005-02-24
'Changed PM_MS3_BESTABS_BUG 2005-02-25
'Changed PM_MS3_ALLOW_Y3 2005-02-25
'Changed PM_MS3_CHARGE_RULES 2005-02-25
'Changed PM_MS3_RELAXED_PRECURSOR_MATCH 2005-02-25
'Changed PM_A2SEQ_BUG 2005-02-25
'Changed PM_REFACTOR 2005-02-25
'Changed PM_REFACTOR 2005-02-26
'Changed PM_MS3_CLEAR_DISPLAY 2005-02-26
'Changed PM_REFACTOR 2005-02-28
'Changed PM_PROTVAL_COLUMNS 2005-02-28
'Changed PM_NO_INIT_TWICE 2005-02-28
'Changed PM_PROTEINLIST_REALHEADERTEXTS 2005-03-01
'Changed PM_REFACTOR 2005-03-01
'Changed PM_REMEMBER_SELECTION 2005-03-01
'Changed PM_EXPORTS_ON_SELECTION 2005-03-01
'Changed PM_SHORTCUT_ACCEPTPROTEIN 2005-03-03
'Changed PM_REFACTOR 2005-03-03
'Changed PM_USER_EXACT_ZOOM 2005-03-03
'Changed PM_REFACTOR 2005-03-04
'Changed PM_ACCUM_MARKERS_BUG 2005-03-04
'Changed PM_FINNIGAN_CLASSIFICAION_BUG 2005-03-04
'Changed PM_REFACTOR 2005-03-05
'Changed PM_ANALYSTSPECTRA_DECOUPLING 2005-03-05
'Changed PM_REFACTOR 2005-03-06
'Changed PM_ANALYSTSPECTRA_DECOUPLING 2005-03-06
'Changed PM_REFACTOR 2005-03-07
'Changed PM_GENERALISED_EXPORT 2005-03-08
'Changed PM_REFACTOR 2005-03-09
'Changed PM_GENERALISED_SPECTRUMCLASSIFICATION 2005-03-13
'Changed PM_GENERALISED_SPECTRUMCLASSIFICATION 2005-03-14
'Changed PM_QUANT_CHARGE_DISPLAY 2005-03-14
'Changed PM_MORE_CLASSIFICATIONS 2005-03-14
'Changed PM_REFACTOR 2005-03-15
'Changed PM_MULTSELECT_PROTEINCHECKED_CLEAR_BUG 2005-03-15
'Changed PM_UNIQUE_COLUMN 2005-04-06
'Changed PM_REFACTOR 2005-04-07
'Changed PM_EVENMORE_GENERALISED_QUANTMODES 2005-04-07
'Changed PM_EVENMORE_GENERALISED_QUANTMODES 2005-04-08
'Changed PM_EVENMORE_GENERALISED_QUANTMODES 2005-04-11
'Changed PM_MORE_CONSTANTS 2005-04-12
'Changed PM_SECRET_MODS 2005-04-12
'Changed PM_UNIQUE_COLUMN_IS_USELESS 2005-04-13
'Changed PM_MKI_MISSED_CLEAVAGES 2005-04-14
'Changed PM_EVENMORE_GENERALISED_QUANTMODES 2005-04-14
'Changed PM_EVENMORE_GENERALISED_QUANTMODES_BUGFIX 2005-04-19
'Changed PM_PROCESS_PRIORITY 2005-04-27
'Changed PM_REFACTOR 2005-05-31
'Changed PM_GENERALISED_QUANTMODES_SERIALISE 2005-05-31
'Changed PM_LTQ_ONLY_DATA 2005-06-03
'Changed PM_ACCEPT_HTML_FILEEXTENSION 2005-06-10
'Changed PM_MASCOT21 2005-06-12
'Changed PM_GENERALISED_QUANTMODES_OBJECTEXCEPTION 2005-06-13
'Changed PM_BETTER_THEO_MASSES 2005-06-24
'Changed PM_HYSTAG_IS_BACK 2005-06-23
'Changed PM_HYSTAG_BADMASS 2005-07-04
'Changed PM_HYSTAG_BADMASS 2005-07-07
'Changed PM_VALIDATIONWINDOW_SHORTCUTS 2005-07-07
'Changed PM_VALIDATIONWINDOW_SHORTCUTS 2005-07-08
'Changed PM_RETURN_VALUE_CHECK_MARKER 2005-07-12
'Changed PM_FINNIGAN_QUANTWINDOW_RELATIVE 2005-07-12
'Changed PM_FINNIGAN_QUANTWINDOW_RELATIVE 2005-07-13
'Changed PM_GET_RID_OF_OLD_CONF_FILES 2005-07-13
'Changed PM_ZOOM_QUANTWINDOW_BROKEN 2005-07-13
'Changed PM_NOT_HYSTAG_FOR_PHOSPHO 2005-07-20
'Changed PM_REFACTOR 2005-07-28
'Changed PM_RECALIB_REPORT 2005-07-28
'Changed PM_RECALIB_REPORT 2005-07-29
'Changed PM_INSERTPEPTIDES_ASSERT 2005-07-29
'Changed PM_EXCLUDE_EMPTY_PROTEINS 2005-07-29
'Changed PM_SPECTRUM_BROWSE 2005-07-29
'Changed PM_SPECTRUM_BROWSE 2005-08-01
'Changed PM_REFACTOR 2005-08-01
'Changed PM_SPECTRUM_BROWSE 2005-08-02
'Changed PM_REFACTOR 2005-08-03
'Changed PM_SPECTRUM_BROWSE 2005-08-04
'Changed PM_PHOSPHO_SCORING 2005-08-07
'Changed PM_REFACTOR 2005-08-08
'Changed PM_BINSAVE_FORMAT 2005-08-08
'Changed PM_STARTUPCHECK_DELETED_FIELDS 2005-08-08
'Changed PM_INFINITE_FRAGMENTS 2005-08-09
'Changed PM_PHOSPHO_SCORING 2005-08-09
'Changed PM_MULTIPLE_AA_FOR_MODIFICATION 2005-08-10
'Changed PM_REFACTOR 2005-08-11
'Changed PM_PHOSPHO_SCORING 2005-08-12
'Changed PM_REFACTOR 2005-08-15
'Changed PM_REFACTOR 2005-08-16
'Changed PM_REFACTOR 2005-08-17
'Changed PM_AUTOMATCH_FRAGMENTS 2005-08-17
'Changed PM_AUTOMATCH_FRAGMENTS 2005-08-18
'Changed PM_FRAGMENTS_EXTRAINFO 2005-08-18
'Changed PM_REFACTOR 2005-09-01
'Changed PM_REFACTOR 2005-09-02
'Changed PM_MANNREDUCTION_LEVEL 2005-09-05
'Changed PM_SQL_CONNECTIONSTR_MUN 2005-09-06
'Changed PM_ZERO_PHOSPHO_JA 2005-09-07
'Changed PM_PHOSPHO_SCORING 2005-09-08
'Changed PM_PRECURSOR_INTENSITY 2005-09-08
'Changed PM_POLYDIMETHYLSILOXYSILANE 2005-09-08
'Changed PM_ORBITROUBLE 2005-09-08
'Changed PM_NO_MICROMASS 2005-09-15
'Changed PM_ORBI_STUFF 2005-09-16
'Changed PM_QUANT_ASSERT_FOR_MS3DATA 2005-09-21
'Changed PM_NO_CORELLATION 2005-09-22
'Changed PM_NO_TRAILLING_SPACE_REQUIREMENT 2005-09-26
'Changed PM_QS11_TROUBLE 2005-09-26
'Changed PM_QSTAR_BROKEN 2005-09-27
'Changed PM_ORBI_EMPTYSPECTRA 2005-09-28
'Changed PM_QUANT_NOISOTOPE 2005-09-28
'Changed PM_ORBI_EMPTYSPECTRA 2005-09-29
'Changed PM_MS3_ZEROSCORE_NOMATCHES 2005-09-29
'Changed PM_MICROMASS_AGAIN 2005-10-06
'Changed PM_PREV_MS_BUG 2005-10-06
'Changed PM_BIG_BAD_BUG 2005-10-10
'Changed PM_PHOSPHO_SCORING_NOLIMIT 2005-10-13
'Changed PM_PHOSPHO_SCORING_EXPORT 2005-10-13
'Changed PM_OBSOLETED 2005-10-17
'Changed PM_REFACTOR 2005-10-17
'Changed PM_PHOSPHO_SCORING_EXPORT 2005-10-17
'Changed PM_MARKER 2005-10-18
'Changed PM_PHOSPHO_SCORING_DISPLAY 2005-10-19
'Changed PM_PHOSPHO_SCORING_EXPORT 2005-10-20
'Changed PM_STANDARDS_COMPLIANCE 2005-10-20
'Changed PM_REFACTOR 2005-10-26
'Changed PM_REFACTOR 2005-10-31
'Changed PM_WINDOW_AGAIN 2005-10-31
'Changed PM_REFACTOR 2005-10-18
'Changed PM_EMPTY_ACCNUMBER 2005-10-18
'Changed PM_EXPORT_HEADERS 2005-10-21
'Changed PM_QS11_TROUBLE 2005-10-21
'Changed PM_EXPORT_INTERNAL 2005-10-21
'Changed PM_MARKER 2005-11-25
'Changed PM_TEMP_OUTCOMMENT 2005-11-25
'Changed PM_MARKER 2005-11-28
'Changed PM_ZAP_PEPTIDES 2005-12-01
'Changed PM_SHORT_EXPORT 2005-12-01
'Changed PM_DEADCODE 2005-12-01
'Changed PM_SAVEDIALOG_TITLE 2005-12-01
'Changed PM_EXPORT_DERIVED_MASS_ERRORS 2005-12-01
'Changed PM_STRUCTURED_PROGRAMMING 2005-12-05
'Changed PM_REFACTOR 2005-12-05
'Changed PM_UPDATE_PROTEINTRATIO 2005-12-05
'Changed PM_LOWSCORING_PEPTIDES_IN_QUANTITATIONWINDOW 2005-12-12
'Changed PM_CAP_HEADER 2005-12-13
'Changed PM_MASCOTDLL_11_DETECTION 2005-12-15
'Changed PM_PHOSPHO_SCORING_USERSEL 2005-12-16
'Changed PM_MARKER 2005-12-19
'Changed PM_MARKER 2005-12-20
'Changed PM_TAB_EXPORTFRAGMENTS 2005-12-21
'Changed PM_MARKER 2005-12-21
'Changed PM_PHOSPHO_SCORING_USERSEL 2005-12-21
'Changed PM_PHOSPHO_SCORING_USERSEL 2005-12-22
'Changed PM_PROTVALWINDOW_VERTICALSIZE 2006-01-02
'Changed PM_REFACTOR 2006-01-03
'Changed PM_PHOSPHO_SCORING_USERSEL 2006-01-03
'Changed PM_PHOSPHO_SCORING_USERSEL 2006-01-04
'Changed PM_REFACTOR 2006-01-04
'Changed PM_MARKER 2006-01-05
'Changed PM_PHOSPHO_SCORING_USERSEL 2006-01-05
'Changed PM_PHOSPHO_SCORING_USERSEL 2006-01-05
'Changed PM_LOWMASS_PHOSPHO_FRAGMENTS 2006-01-06
'Changed PM_PHOSPHO_SCORING 2006-01-09
'Changed PM_ECD 2006-01-11
'Changed PM_ECD 2006-01-12
'Changed PM_XCALIBUR_RELOCATION_NOTES 2006-01-16
'Changed PM_ECD 2006-01-16
'Changed PM_INFINITELOOP_SPECCLASSIFY 2006-02-09
'Changed PM_ESI_DEFAULTS_SPECCLASSIFY 2006-02-09
'Changed PM_ALMOSTINFINITELOOP_PERIODFIELD 2006-02-09
'Changed PM_WEAKLY_TYPED_SPECTRUMCLASSIFICATION 2006-02-15
'Changed PM_REFACTOR 2006-02-15
'Changed PM_REFACTOR 2006-02-16
'Changed PM_WEAKLY_TYPED_SPECTRUMCLASSIFICATION 2006-02-16
'Changed PM_SMARTPICKING_SEGMENTING 2006-02-20
'Changed PM_VISUAL_COLUMNSORT 2006-02-23
'Changed PM_MARKER 2006-02-23
'Changed PM_REFACTOR 2006-02-24
'Changed PM_VISUAL_COLUMNSORT 2006-02-24
'Changed PM_PROTEINRATIO_FOR_EACH_RAWFILE 2006-02-27
'Changed PM_PTMDISLAY_TROUBLE 2006-02-28
'Changed PM_MARKER 2006-03-01
'Changed PM_VISUAL_COLUMNSORT_TROUBLE 2006-03-01
'Changed PM_MISLEADING_EXPORT_PTMSCORE 2006-03-01
'Changed PM_MARKER 2006-03-02
'Changed PM_FRAGMENTMATCHING_MARKER_BUG 2006-03-02
'Changed PM_ALWAYSSHOW_BEST_MS3_MATCH 2006-03-03
'Changed PM_MS3_ASSERT 2006-03-03
'Changed PM_REINTRODUCE_BUTTONS 2006-03-06
'Changed PM_REFACTOR 2006-03-07
'Changed PM_ALWAYS_SHOW_RAWFILE 2006-03-07
'Changed PM_REFACTOR 2006-03-08
'Changed PM_PTMSCORE_FAILURE 2006-03-08
'Changed PM_FRAGMENTEXPORT_ASSERT 2006-03-09
'Changed PM_GENERALISED_PTMSCORE 2006-03-09
'Changed PM_GENERALISED_PTMSCORE 2006-03-10
'Changed PM_ASSERT_FOR_MICROMASS 2006-03-14
'Changed PM_MICROMASS_SPECTRUM_MASSRANGE_BUG 2006-03-14
'Changed PM_SCORE_FOR_ZZZZ_PEPTIDES 2006-03-14
'Changed PM_DEADCODE 2006-03-14
'Changed PM_REFACTOR_HOTSPOT 2006-03-16
'Changed PM_REFACTOR 2006-03-15
'Changed PM_SORTBUG 2006-03-17
'Changed PM_REFACTOR 2006-03-17
'Changed PM_UNNECESSARY_PEPTIDELISTR_UPDATE 2006-03-17
'Changed PM_UNNECESSARY_CODE 2006-03-20
'Changed PM_PEPTIDE_FILTER 2006-03-20
'Changed PM_CALIB_VALUES_IN_UNCALIB_DATA 2006-03-20
'Changed PM_CLEANER 2006-03-21
'Changed PM_SAVE_EXTENSION_BIX 2006-03-21
'Changed PM_EXTERNAL_CALIB_MASSTRANSFORMATION_BUG 2006-03-21
'Changed PM_PROTEINMASS_DECIMAL 2006-03-22
'Changed PM_BAD_PROTEINRATIO_FOR_NO_SPECTRA 2006-03-23
'Changed PM_ASSERT_ZAPPED_PROTEINS 2006-03-23
'Changed PM_BAD_PROTEINRATIO_FOR_NO_SPECTRA 2006-03-24
'Changed PM_ASSERT_DELETING_PEPTIDES_FOR_COMBININED_FILES 2006-03-24
'Changed PM_COMBINED_INDEXOUTOFRANGE_EXCEPTION 2006-03-27
'Changed PM_GENERALISED_PTMSCORE2 2006-03-27
'Changed PM_UBIK_ASSERT 2006-03-28
'Changed PM_PHASEOUT_FRAGNORMAL 2006-04-04
'Changed PM_BAD_QUANTITATION_MASSSCALE 2006-04-04
'Changed PM_NOEMPTY_AT_DRAGLCPEAKSELECT 2006-04-05
'Changed PM_REFACTOR 2006-04-05
'Changed PM_SPEC_DISPLAYFORTRIPLEENCODING 2006-04-05
'Changed PM_CID_FRAGMENTSUBTYPE 2006-04-19
'Changed PM_Y_DOUBLE_CHARGED_MASS_LIMIT 2006-04-19
'Changed PM_DTASC_FRAGANDSOURCE_LABELS 2006-04-28
'Changed PM_DTASC_FRAGANDSOURCE_LABELS 2006-05-01
'Changed PM_GENERALISED_PTMSCORE 2006-05-03
'Changed PM_MAX_TRIES 2006-05-04
'Changed PM_REFACTOR 2006-05-08
'Changed PM_BAD_MS3_MASSES 2006-05-08
'Changed PM_SORT_MODCOLUMN 2006-05-08
'Changed PM_LIMIT_PTM_OUTPUT 2006-05-09
'Changed PM_PEPTIDEFILTER_HIGHESTSCORING 2006-05-19
'Changed PM_LIMIT_PTM_OUTPUT_TO_20 2006-06-07
'Changed PM_MOD_PREFIX_AND_POSTFIX 2006-06-07
'Changed PM_VS2005 2006-06-14
'Changed PM_VS2005_SERIOUS 2006-06-15
'Changed PM_VS2005 2006-06-15
'Changed PM_LCPEAKDETECTION_OPTIONS 2006-06-16
'Changed PM_SINGLE_MISSING_FILES_ERRMSG 2006-06-16
'Changed PM_REFACTOR 2006-06-20
'Changed PM_LCPEAKDETECTION_OPTIONS 2006-06-20
'Changed PM_LCPEAKDETECTION_OPTIONS 2006-06-21
'Changed PM_REFACTOR 2006-06-21
'Changed PM_PEPTIDE_POSITION 2006-06-22
'Changed PM_PTM_EFFICIENCY 2006-06-27
'Changed PM_MARKER 2006-06-28
'Changed PM_PTMBUG 2006-06-28
'Changed PM_REFACTOR 2006-06-29
'Changed PM_ERROR_HANDLING_FINWRAP 2006-07-02
'Changed PM_MARKER 2006-07-02
'Changed PM_REFACTOR 2006-07-03
'Changed PM_PTMBUG 2006-07-03
'Changed PM_DTASC_COMPILE 2006-07-04
'Changed PM_QUANTGENERAL_PREPARATION 2006-07-12
'Changed PM_CODEMARKER 2006-07-13
'Changed PM_QUANTGENERAL_PREPARATION 2006-07-13
'Changed PM_QUANTGENERAL_PREPARATION 2006-07-14
'Changed PM_QUANTGENERAL_PREPARATION 2006-07-17
'Changed PM_QUANTGENERAL_PREPARATION 2006-07-19
'Changed PM_XMLFILE_SWITCH_BUG 2006-07-24
'Changed PM_REFACTOR 2006-07-24
'Changed PM_EMPTYFILESDLG_FOR_NOMISSING 2006-07-26
'Changed PM_ERRHANDLING_OUT_OF_MEMORY 2006-07-26
'Changed PM_XMLFILE_SWITCH_BUG 2006-07-26
'Changed PM_UNKNOWN_QUANTCODE_BUG 2006-07-26
'Changed PM_DEFAULT_NOINSERTIONOFPEPTIDES 2006-07-26
'Changed PM_DTASC_COMPILE 2006-07-26
'Changed PM_SAVEMEMORY_CLIPBOARD 2006-07-27
'Changed PM_VSFIDELING 2006-07-27
'Changed PM_OWNEDFORM 2006-07-27
'Changed PM_PROTEINLISTCOLUMNS_ORDER 2006-07-28
'Changed PM_FIND 2006-07-28
'Changed PM_MODIFICATION_FILTER_UNTIDYNESS 2006-08-01
'Changed PM_QUANTGENERAL_PREPARATION_BUGFIX 2006-08-01
'Changed PM_COMB_FOR_MS3 2006-08-01
'Changed PM_LCPEAK_LARGEVALUES 2006-08-08
'Changed PM_LCPEAK_YVALUE_MSPEAKAREA 2006-08-08
'Changed PM_RETT_TROUBLE 2006-08-10
'Changed PM_REFACTOR 2006-08-10
'Changed PM_EXTERNAL_QUANT_TROUBLE 2006-08-10
'Changed PM_REPORTS 2006-08-15
'Changed PM_MOD_STATS 2006-08-15
'Changed PM_BROKEN_MS3 2006-08-18
'Changed PM_REPORTS 2006-08-21
'Changed PM_CODEMARKER 2006-08-21
'Changed PM_MARKER_REFACTOR 2006-08-24
'Changed PM_PTM_BROKEN20060713 2006-08-24
'Changed PM_OPEN_APP_FOLDER 2006-08-25
'Changed PM_REFACTOR 2006-08-28
'Changed PM_RT_OUT_OF_FILE 2006-08-28
'Changed PM_MEMORYPROBLEM 2006-08-30
'Changed PM_REFACTOR 2006-08-31
'Changed PM_REFACTOR 2006-09-01
'Changed PM_CODENOTE 2006-09-01
'Changed PM_VALIDATION_BEFOREOPEN 2006-09-01
'Changed PM_REFACTOR 2006-09-02
'Changed PM_MODNAME_RECOGNISED 2006-09-12
'Changed PM_NO_PREVNEXT_SPEC_GUI 2006-09-22
'Changed PM_REFACTOR 2006-10-01
'Changed PM_REFACTOR_MARKER 2006-10-03
'Changed PM_REFACTOR 2006-10-03
'Changed PM_REFACTOR 2006-10-04
'Changed PM_REFACTOR_MARKER 2006-10-05
'Changed PM_REFACTOR 2006-10-05
'Changed PM_REFACTOR 2006-10-06
'Changed PM_REFACTOR 2006-10-06_MARKER
'Changed PM_REFACTOR_LFCODE 2006-10-09
'Changed PM_REFACTOR 2006-10-09
'Changed PM_REFACTOR 2006-10-10
'Changed PM_REFACTOR_MARKER_A 2006-10-11
'Changed PM_REFACTOR 2006-10-11
'Changed PM_REFACTOR_MARKER_A 2006-10-12
'Changed PM_REFACTOR_MARKER_BUG 2006-10-12
'Changed PM_REFACTOR 2006-10-12
'Changed PM_POSSIBLE_OLD_BUG 2006-10-13
'Changed PM_REFACTOR_MARKER 2006-10-13
'Changed PM_REFACTOR 2006-10-13
'Changed PM_REFACTOR 2006-10-16
'Changed PM_REFACTOR 2006-10-17
'Changed PM_CORR_EXPORT_UNITS 2006-10-18
'Changed PM_REFACTOR 2006-10-18
'Changed PM_EMPTY_LCPROFILE_BUG 2006-10-18
'Changed PM_MARKER 2006-10-18
'Changed PM_CORR_MODIFICATION_UNIQUEESS 2006-10-20
'Changed PM_CORR_NONINCLUDEDPEPTIDES_BUG 2006-10-20
'Changed PM_CORR_DISTINCTCHARGE 2006-10-20
'Changed PM_MARKER 2006-10-22
'Changed PM_REFACTOR 2006-10-22
'Changed PM_UNIQUEMODS_FOR_RETCORR 2006-10-22
'Changed PM_MASS_UNIQUENESS 2006-10-23
'Changed PM_RETCORR_ANYTIME 2006-10-24
'Changed PM_SUPERFLUOUS_CODE 2006-10-24
'Changed PM_ZAP_PEPTIDES 2006-10-25
'Changed PM_TYPESAFE 2006-10-25
'Changed PM_REFACTOR 2006-10-25
'Changed PM_RETCORR_ANYTIME 2006-10-25
'Changed PM_SUPERFLUOUS_CODE 2006-10-26
'Changed PM_RETCORR_ANYTIME 2006-10-26
'Changed PM_REFACTOR 2006-10-26
'Changed PM_RETCORR_LCCENTROID 2006-10-26
'Changed PM_SCORETHRESHOLD_BOUNDARY_BUG 2006-10-26
'Changed PM_RETCORR_LCCENTROID 2006-10-27
'Changed PM_RETCORR_LCCENTROID_BSFILE 2006-10-27
'Changed PM_CODEMARKER 2006-10-31
'Changed PM_MEMORY_EFFICIENCY_256 2006-10-31
'Changed PM_BAD_PRECURSORMASS 2006-10-31
'Changed PM_ALSO_PRECURSOR_FOR_MS3 2006-10-31
'Changed PM_CODEMARKER 2006-11-01
'Changed PM_TYPESAFE_ANDLAZYINSTANTIATE 2006-11-01
'Changed PM_TYPESAFE 2006-11-01
'Changed PM_TYPESAFE_TYPEMISMATCH 2006-11-03
'Changed PM_RETCORR_ANYTIME 2006-11-03
'Changed PM_RETCORR_ANYTIME_LOAD 2006-11-04
'Changed PM_PLOTERROR 2006-11-05
'Changed PM_PLOTADJUSTMENT 2006-11-05
'Changed PM_REFACTOR 2006-11-05
'Changed PM_DISPLAY_FULL_RETT_RANGE 2006-11-05
'Changed PM_REFACTOR_BUG 2006-11-05
'Changed PM_RET_RANGE_ASSERT 2006-11-05
'Changed PM_DISPLAY_FULL_RETT_RANGE 2006-11-06
'Changed PM_TYPESAFE 2006-11-06
'Changed PM_TYPESAFE_HASH 2006-11-06
'Changed PM_TYPESAFE_HASH_TRYGETVALUE 2006-11-07
'Changed PM_DTASC_SUPPORT 2006-11-07
'Changed PM_NO_RATIO_OF_INTENSITY_SUMS 2006-11-08
'Changed PM_LIMIT_EXPORT 2006-11-08
'Changed PM_PROTEINEXPORT_EXCEPTION 2006-11-08
'Changed PM_REFACTOR 2006-11-08
'Changed PM_TYPESAFE_HASH_ENUMERATOR 2006-11-08
'Changed PM_TYPESAFE 2006-11-08
'Changed PM_RET_RANGE_ASSERT_JD 2006-11-09
'Changed PM_TYPESAFE 2006-11-09
'Changed PM_LFCODE_REMARK 2006-11-09
'Changed PM_DEADCODE 2006-11-09
'Changed PM_XIC_NOZERO 2006-11-10
'Changed PM_ONLY_XIC 2006-11-10
'Changed PM_ONLY_MSPEAKAREA 2006-11-10
'Changed PM_ONLY_MSPEAKAREA_THRESHOLD 2006-11-10
'Changed PM_USERDEFINED_QUANT_THRESHOLD 2006-11-10
'Changed PM_OLD_BUTTONS 2006-11-12
'Changed PM_SAVE_MEMORY 2006-11-12
'Changed PM_QUANT_AUTO_CENTERING 2006-11-12
'Changed PM_SAVE_MEMORY 2006-11-13
'Changed PM_QUANT_AUTO_CENTERING 2006-11-13
'Changed PM_COMMANDLINE 2006-11-14
'Changed PM_STRANGE_CODE_DISABLED 2006-11-15
'Changed PM_NOSELECTIO_NEEDED_FOR_OPENING_BIN 2006-11-15
'Changed PM_DANGEROUS 2006-11-15
'Changed PM_NO_PROTEINLINE_COLOUR 2006-11-15
'Changed PM_REFACTOR 2006-11-15
'Changed PM_COMMANDLINE 2006-11-15
'Changed PM_COMMANDLINE 2006-11-16
'Changed PM_UNIT_INEXPORT 2006-11-17
'Changed PM_EXPORT_HEADER 2006-11-17
'Changed PM_SLOW_QUANTWINDOW 2006-11-20
'Changed PM_CODEMARKER_MS3_MULTIPLE 2006-11-21
'Changed PM_CODEMARKER_PROTEINLIST_COLOURS 2006-11-21
'Changed PM_CMD_NO_FIRST_PROTEIN 2006-11-22
'Changed PM_CMD_PARAMETER_CHECKS 2006-11-22
'Changed PM_CMD_DISPLAY_PARAMETERS 2006-11-22
'Changed PM_CMD_EMPTY_PROTEINS 2006-11-22
'Changed PM_CODEMARKER_0.3DA_CATCHDISTANCE 2006-11-22
'Changed PM_REFACTOR 2006-11-27
'Changed PM_CMD_MS3_AND_PTM 2006-11-27
'Changed PM_MEMORYEFFICIENCY_PARSE 2006-11-28
'Changed PM_CODEMARKER 2006-11-28
'Changed PM_PARSESPEED_INTERNAL 2006-11-28
'Changed PM_SPLIT_AND_MERGE_PROTEINS 2006-11-28
'Changed PM_REFACTOR 2006-11-28
'Changed PM_MICROMASS_UPDATE 2006-11-29
'Changed PM_SNIPS_OUJ_RKN 2006-11-29
'Changed PM_CODEMARKER 2006-11-30
'Changed PM_DTASC_COMPILE 2006-12-13
'Changed PM_FAST_SERIALISATION 2006-12-15
'Changed PM_FAST_SERIALISATION 2006-12-16
'Changed PM_REFACTOR 2006-12-16
'Changed PM_REFACTOR 2006-12-17
'Changed PM_FAST_SERIALISATION 2006-12-17
'Changed PM_FAST_SERIALISATION 2006-12-18
'Changed PM_FAST_SERIALISATION 2006-12-19
'Changed PM_DEBUGTRACE 2006-12-19
'Changed PM_FAST_SERIALISATION_AVOID_DOTNET 2006-12-19
'Changed PM_FAST_SERIALISATION_AVOID_DOTNET 2006-12-20
'Changed PM_FAST_SERIALISATION_AVOID_DOTNET 2006-12-28
'Changed PM_FAST_SERIALISATION_AVOID_DOTNET 2006-12-29
'Changed PM_FAST_SERIALISATION 2006-12-30
'Changed PM_DISPLAY_NUMBER_SELECTED 2006-12-30
'Changed PM_NATURAL_TYPE 2006-12-30
'Changed PM_FAST_SERIALISATION_READ 2007-01-01
'Changed PM_FAST_SERIALISATION_READ 2007-01-02
'Changed PM_FAST_SERIALISATION_READ 2007-01-03
'Changed PM_NUMBER_PEPTIDES_FOR_PEPTIDE_FILTER_BUG 2007-01-03
'Changed PM_FAST_SERIALISATION_READ 2007-01-04
'Changed PM_FAST_SERIALISATION_BUG_FOR_NO_QUANTRESULT 2007-01-05
'Changed PM_UNNECESSARY_CODE_INSERTING_PEPTIDES 2007-01-08
'Changed PM_FAST_SERIALISATION_BUG_SAVE_INSERTED_PEPTIDES 2007-01-08
'Changed PM_REFACTOR 2007-01-08
'Changed PM_FAST_SERIALISATION_BUG_LOAD_INSERTED_PEPTIDES 2007-01-08
'Changed PM_RIGHT_AFTER_PARSE_RETENTIONTIME 2007-01-08
'Changed PM_EXPORT_BUG_QUANTIFIED_NO_ISOTOPE 2007-01-08
'Changed PM_XCALIBUR20SR1_DETECTION 2007-01-09
'Changed PM_QUANTGENERAL_BUGFIX_MORETHAN3DISHES 2007-01-09
'Changed PM_DISPLAY_NUMBER_SELECTED 2007-01-09
'Changed PM_STATISTICS_N 2007-01-11
******* Ver 1.4 released!!!!
'Changed PM_REFACTOR 2007-01-12
'Changed PM_UNUSUAL_AMINOACIDS 2007-01-12
'Changed PM_REFACTOR 2007-01-15
'Changed PM_MARKER_TAB_IN_CMD 2007-01-17
'Changed PM_QUANTTROUBLE_USEAREA 2007-01-25
'Changed PM_FASTER 2007-01-26
'Changed PM_POSTQUANTITATION_MISSING_UDPATE 2007-01-26
'Changed PM_MARKER_STRANGE_TEN_FACTOR_RULE 2007-01-29
'Changed PM_MARKER_NOTUPDATED_UNCHECKED_SPECTRA 2007-01-29
'Changed PM_MARKER 2007-01-29
'Changed PM_NOTUPDATED_UNCHECKED_SPECTRA 2007-01-29
'Changed PM_MARKER 2007-01-30
'Changed PM_MARKER_20_PERCENT_RULE 2007-01-30
'Changed PM_MARKER 2007-01-31
'Changed PM_LOCAL_20_PERCENT_RULE 2007-01-31
'Changed PM_SCREENSPACE 2007-01-31
'Changed PM_TAB_ACCEPTED_IN_CMD 2007-02-01
'Changed PM_CHECK_BINFILE_EXISTENCE 2007-02-01
'Changed PM_QUANT_INSERTED_PEPTIDE_MASK_BUG 2007-02-02
'Changed PM_MEMORYEFFICIENCY_PARSE 2007-02-19
'Changed PM_MEMORY_EFFICIENCY 2007-02-19
'Changed PM_PROTEINSCORE_BUG 2007-02-20
'Changed PM_MORETHAN3DISHES_PROTEINHEADER 2007-02-23
'Changed PM_REFACTOR 2007-02-23
'Changed PM_STATISTICS_N 2007-02-23
'Changed PM_MEMORY_EFFICIENCY 2007-02-25
'Changed PM_MARKER_SHOULD_BE_DOUBLE 2007-02-25
'Changed PM_EXPORT_DECIMALS 2007-03-12
'Changed PM_DEEPER_BAD_VALUE 2007-03-13
'Changed PM_INHERITED_QUANTVALUES_IN_EXPORT 2007-03-13
'Changed PM_MARKER_DELETE 2007-03-14
'Changed PM_SAMPLE_TWO_MODS_IN_A_DISH 2007-03-14
'Changed PM_GUINAMEINDEX_SENSITIVITY 2007-03-14
'Changed PM_REFACTOR 2007-03-14
'Changed PM_MARKER 2007-03-14
'Changed PM_MARKER_PTM 2007-03-15
'Changed PM_REFACTOR 2007-03-16
'Changed PM_MARKER_PTM 2007-03-16
'Changed PM_BROADER_PTMSCORE 2007-03-16
'Changed PM_FRAGMENTS_PEPTIDEINFO 2007-03-22
'Changed PM_REFACTOR 2007-03-22
'Changed PM_EXPORT_IMPORTEDACC 2007-03-22
'Changed PM_MEMORY_EFFICIENCY 2007-03-22
'Changed PM_BROADER_PTMSCORE_FUTURE 2007-03-23
'Changed PM_BROADER_PTMSCORE 2007-03-23
'Changed PM_BROADER_PTMSCORE 2007-03-26
'Changed PM_MARKER_PTM 2007-03-26
'Changed PM_OBSOLETE 2007-03-27
'Changed PM_REFACTOR 2007-03-27
'Changed PM_BROADER_PTMSCORE 2007-03-27
'Changed PM_MARKER 2007-03-27
'Changed PM_MARKER 2007-03-28
'Changed PM_BROADER_PTMSCORE 2007-03-29
'Changed PM_BROADER_PTMSCORE 2007-03-30
'Changed PM_REFACTOR 2007-03-30
'Changed PM_REFACTOR 2007-04-02
'Changed PM_TYPESAFE 2007-04-03
'Changed PM_BROADER_PTMSCORE 2007-04-03
'Changed PM_QUANTCOLUMNS_SORT 2007-04-03
'Changed PM_BROADER_PTMSCORE 2007-04-04
'Changed PM_BROADER_PTMSCORE_SELFCHECK 2007-04-04
'Changed PM_MASCOT22 2007-04-10
'Changed PM_MASCOT22 2007-04-11
'Changed PM_MASCOT22_OLDERFORMATS 2007-04-12
'Changed PM_NOQUANTEXPORT_AFTER_ZAPPED_BUG 2007-04-13
'Changed PM_MARKER_INFINITE_SILAC_DISHES 2007-04-13
'Changed PM_CLICKOFF_QUANTPEPTIDE_BUG 2007-04-13
'Changed PM_MASCOT22_EMPAI_TROUBLE 2007-04-16
'Changed PM_BROADER_PTMSCORE_AUTOMATION 2007-04-16
'Changed PM_MEMORY_EFFICIENCY 2007-04-16
'Changed PM_BROADER_PTMSCORE_DASHPROBLEM 2007-04-16
'Changed PM_AUTODOCUMENTATION 2007-04-17
'Changed PM_AUTODOCUMENTATION 2007-04-18
'Changed PM_MASCOT22_MORE_TROUBLE 2007-04-19
'Changed PM_REOPEN_PROTVAL_PTMSCORE 2007-04-19
'Changed PM_VERSION_INFO 2007-04-19
'Changed PM_PARSE_PEPTIDE_CHECKED_STATE 2007-05-01
'Changed PM_PARSED_BOLDBLACK_BUG 2007-05-01
'Changed PM_DOCBOOK_IN_SETTINGS_FILES_BUG 2007-05-02
'Changed PM_MISCOPTIONS_SIMPLE_XML 2007-05-02
'Changed PM_XMLFILE_HEADERCOMMENTS 2007-05-03
'Changed PM_MISCOPTIONS_SIMPLE_XML 2007-05-03
'Changed PM_REFACTOR 2007-05-03
'Changed PM_REFACTOR 2007-05-07
'Changed PM_MS3_CRASH 2007-05-14
'Changed PM_MS3_HEADERPARSE_TROUBLE 2007-05-15
'Changed PM_MS3_CRASH 2007-05-15
'Changed PM_RECALIBRATION_TROUBLE 2007-05-16
'Changed PM_PARSE_TROUBLE_OPENTWICE 2007-05-18
'Changed PM_IGNORED_MISCOPTIONS_BUG 2007-06-06
'Changed PM_MODFILTER_PAGING 2007-06-06
'Changed PM_NORWEGIAN_DECIMALCRASH 2007-06-06
'Changed PM_REFACTOR_TITLELINEPARSING 2007-06-08
'Changed PM_TITLELINEPARSING 2007-06-08
'Changed PM_TITLELINEPARSING 2007-06-11
'Changed PM_QSTAR_DOUBLE_INSTANCE 2007-06-11
'Changed PM_TITLELINEPARSING_WRITEOUT 2007-06-11
'Changed PM_COLOURLESS_BUG 2007-06-12
'Changed PM_FLEXIBLE_RAWFILE_LOC 2007-06-12
'Changed PM_TITLELINEPARSING 2007-06-14
'Changed PM_TITLELINEPARSING_MARKER_DEFAULTS 2007-06-14
'Changed PM_QSTAR_ROUNDING 2007-06-14
'Changed PM_STANDARDISE 2007-06-20
'Changed PM_QUANTWINDOW_INCLUSION_BUG 2007-06-20
'Changed PM_PTM_FOR_ALL 2007-06-21
'Changed PM_DOTNET_HELL 2007-06-22
'Changed PM_CLEAR_MS3 2007-06-25
'Changed PM_MORE_QSTAR_TROUBLE 2007-06-28
'Changed PM_MB3_EXTENSION 2007-07-09
'Changed PM_SPECTRUMDOWN_FULLDISPLAY 2007-07-10
'Changed PM_REFACTOR 2007-07-11
'Changed PM_SPECTRUMDOWN_MS3DISPLAY 2007-07-11
'Changed PM_TYPESAFE 2007-07-12
'Changed PM_USERSET_MS3_MATCHING_TOLERANCE 2007-07-13
'Changed PM_REFACTOR 2007-07-18
'Changed PM_REFACTOR 2007-07-19
'Changed PM_REFACTOR 2007-07-20
'Changed PM_REFACTOR 2007-07-21
'Changed PM_REFACTOR 2007-07-22
'Changed PM_REFACTOR 2007-07-23
'Changed PM_ANALYST_GRAPHZOOM_DISABLED 2007-07-23
'Changed PM_REFACTOR_COMVERSIONS 2007-07-24
'Changed PM_COMVERSIONS 2007-07-24
'Changed PM_ANALYST_GRAPHZOOM_HANDLING 2007-07-25
'Changed PM_PROTVAL_SCROLLBAR 2007-07-27
'Changed PM_QUANTWINDOW_REOPEN_NO_UPDATE_FOR_PEPTIDE_CLICK 2007-07-30
'Changed PM_EXPORT_USED_IN_PROTEINQUANT 2007-07-30
'Changed PM_QUANTWINDOW_REOPEN_CHECKED_FOR_USE_IN_QUANT 2007-07-30
'Changed PM_COLLAPSED_AA 2007-07-31
'Changed PM_MODIFICATION_SANITYCHECK 2007-07-31
'Changed PM_REFACTOR_SPECIAL_MODFILTER_ON_MB3 2007-08-01
'Changed PM_SPECIAL_MODFILTER_ON_MB3 2007-08-01
'Changed PM_BETTER_PARSEERROR_MESSAGE 2007-08-02
'Changed PM_KRIEGSHEIM_TROUBLE 2007-08-02
'Changed PM_MODIFICATIONS_UNIQUE_MATCH_STRING 2007-08-02
'Changed PM_REFACTOR 2007-08-02
'Changed PM_TYPESAFE 2007-08-02
'Changed PM_PTMSCORE_ALL_MODIFIED 2007-08-03
'Changed PM_EXPORT_PTMCOMBS 2007-08-03
'Changed PM_PTMSCORE_MEMORY_EFFICIENCY 2007-08-03
'Changed PM_PTMSCORE_STATS 2007-08-03
'Changed PM_MICROMASS_ASSERT 2007-08-08
'Changed PM_MARKER 2007-08-08
'Changed PM_PTM_FOR_ALL 2007-08-08
'Changed PM_N15_BEFORE_PLUS 2007-08-08
'Changed PM_TYPESAFE 2007-08-08
'Changed PM_MARKER_RELEASE_1_4_2 2007-08-10
'Changed PM_LESSSTRICT_READINGOPTIONS 2007-08-22
'Changed PM_NEWXML_DEFAULTCODEPATHS 2007-08-23
'Changed PM_OPTIONS_SIMPLE_XML 2007-08-23
'Changed PM_DISABLE_OLD_OPTIONS 2007-08-23
'Changed PM_TYPESAFE 2007-08-23
'Changed PM_LTQFT_PROGRAMDEFAULT 2007-08-23
'Changed PM_CODEMARKER 2007-08-24
'Changed PM_PEPTIDEFILTER_GENERALISED 2007-08-24
'Changed PM_PEPTIDEFILTER_GENERALISED 2007-08-25
'Changed PM_PEPTIDEFILTER_GENERALISED 2007-08-26
'Changed PM_REFACTOR 2007-08-26
'Changed PM_REFACTOR 2007-08-27
'Changed PM_MARKER_FAIL 2007-08-27
'Changed PM_PEPTIDEFILTER_GENERALISED 2007-08-27
'Changed PM_PEPTIDEFILTER_GENERALISED 2007-08-28
'Changed PM_OBSOLETE_OR_DEADCODE_NOTE 2007-08-29
'Changed PM_TYPESAFE 2007-08-29
'Changed PM_REFACTOR 2007-08-29
'Changed PM_EXPORT_SHORTCUT 2007-08-29
'Changed PM_PEPTIDEFILTER_GENERALISED 2007-08-29
'Changed PM_REFACTOR 2007-08-30
'Changed PM_DOUBLE_RETURN_KEY 2007-08-31
'Changed PM_REFACTOR 2007-08-31
'Changed PM_RETURN_KEY_OPEN_QUANTPETIDE 2007-08-31
'Changed PM_MARKER_POSSIBLE_BUG 2007-08-31
'Changed PM_PROTEINVAL_REQUIRES_PEPTIDEVALS 2007-08-31
'Changed PM_BLENDOUT_QUANTMODES 2007-08-31
'Changed PM_REFACTOR 2007-09-02
'Changed PM_RECALIB_VISUAL 2007-09-02
'Changed PM_RECALIB_VISUAL_UPDATE 2007-09-04
'Changed PM_REFACTOR 2007-09-04
'Changed PM_MARKER_VALIDATION 2007-09-04
'Changed PM_MARKER_PEPITERATOR_CLEANUP 2007-09-04
'Changed PM_MARKER_CANCEL_SAVES 2007-09-04
'Changed PM_RECALIB_VISUAL_SAVE 2007-09-04
'Changed PM_MODLIST_NOTREAD_BUG 2007-09-04
'Changed PM_PEPTIDECOUNT_BUG 2007-09-04
'Changed PM_RECALIB_FILTER 2007-09-04
'Changed PM_MASSACC_PEPFILTER 2007-09-05
'Changed PM_IGNORED_PEPTIDES_EXPOSED 2007-09-05
'Changed PM_MARKER_VALIDATION_AS_PEPTFILTER 2007-09-05
'Changed PM_VALIDATION_AS_PEPTFILTER 2007-09-05
'Changed PM_REFACTOR 2007-09-05
'Changed PM_CANCEL_ALSO_SAVES_PEPTFILT_BUG 2007-09-06
'Changed PM_SAVING_REMOVEDPEPTIDES_BUG 2007-09-07
'Changed PM_INTERNALPROTINDEX_BUG 2007-09-07
'Changed PM_DOUBLE_RETURN_KEY 2007-09-08
'Changed PM_DIRTY_ALWAYS 2007-09-10
'Changed PM_MODDEFS_ABSENT_BUG 2007-09-10
'Changed PM_TERMMOD_MARKER 2007-09-10
'Changed PM_TERMMOD 2007-09-10
'Changed PM_C13_CORRECTION 2007-09-12
'Changed PM_120DA_RULE 2007-09-12
'Changed PM_CARBAMIDOCYS_MASS 2007-09-13
'Changed PM_BAD_QSTARSPECTRUM_FOR_PTMSCORING 2007-09-14
'Changed PM_TERMMOD_FRAGMENTMASS_TROUBLE 2007-09-14
'Changed PM_TERMMOD_FRAGMENTMASS_TROUBLE_MARKER 2007-09-14
'Changed PM_REFACTOR 2007-09-18
'Changed PM_MARKER_ZEDGRAPH 2007-09-19
'Changed PM_STICKS_ZEDGRAPH 2007-09-19
'Changed PM_SPECTRUMDISPLAY_ZEDGRAPH 2007-09-19
'Changed PM_REFACTOR 2007-09-19
'Changed PM_MS3SCORE_ASSERT 2007-09-24
'Changed PM_SPECTRUMDISPLAY_ZEDGRAPH 2007-09-24
'Changed PM_RECALIBVISUAL_GRID 2007-09-24
'Changed PM_VALIDATION_AFTER_RECALIBRATION 2007-09-24
'Changed PM_REFACTOR 2007-09-25
'Changed PM_SPECTRUMDISPLAY_ZEDGRAPH 2007-09-25
'Changed PM_RAWFILETYPE_CHANGE_QUANTBUG 2007-09-27
'Changed PM_REFACTOR 2007-10-01
'Changed PM_RECALIB_VISUAL_BINNING 2007-10-01
'Changed PM_QSTAR_BROKEN 2007-10-03
'Changed PM_REFACTOR 2007-10-03
'Changed PM_QSTAR_BROKEN_ZOOMING 2007-10-03
'Changed PM_RECALIBVISUAL_MORESPACE 2007-10-03
'Changed PM_REFACTOR 2007-10-04
'Changed PM_AVERAGEERROR_BYMCR 2007-10-04
'Changed PM_HIGHESTSCORINGUNIQUELYMODIFIED_BUG 2007-10-04
'Changed PM_HIGHESTSCORINGUNIQUELYMODIFIED_BUG 2007-10-05
'Changed PM_REFACTOR 2007-10-08
'Changed PM_RECALIB_VISUAL_MEDIAN 2007-10-08
'Changed PM_QSTAR_BROKEN_QUANTITATION 2007-10-09
'Changed PM_MARKER 2007-10-10
'Changed PM_QSTAR_BROKEN_QUANTITATION_FULLZOOMBUG 2007-10-10
'Changed PM_EFFICIENCY 2007-10-10
'Changed PM_MS3_BADZOOM 2007-10-11
'Changed PM_DISPLAY_BOUNDARY_SPECTRUMDATA 2007-10-11
'Changed PM_QUANT_ALL 2007-10-12
'Changed PM_MB3_DISHCOUNT_PROBLEM 2007-10-12
'Changed PM_REFACTOR 2007-10-24
'Changed PM_IMPOSSIBLELOWMASS_ASSERT 2007-10-26
'Changed PM_REFACTOR 2007-10-29
'Changed PM_QUANTEXPORT_RECALIBSWOP 2007-10-30
'Changed PM_MARKER_MSRECALIB_FOR_FRAGMENTS 2007-10-30
'Changed PM_REFACTOR 2007-10-30
'Changed PM_MANYPHOSMODS_CRASH 2007-10-31
'Changed PM_QSTARCOMBINED_ASSERT 2007-11-01
'Changed PM_NO_INFINITELOOP_QSFORMATS 2007-11-01 where is this??
'Changed PM_VISUALISATION_ABSOLUTE_MCR 2007-11-02
'Changed PM_DOMAINS_RECALIBRATION 2007-11-05
'Changed PM_RECALIB_VISUAL_DEFAULT_MEDIANERRORS 2007-11-06
'Changed PM_DOMAINS_RECALIBRATION 2007-11-06
'Changed PM_RECALIB_VISUAL_DEFAULT_THOMSON 2007-11-06
'Changed PM_RECALIB_VISUAL_ID_IN_TITLE 2007-11-06
'Changed PM_RECALIB_AFTERPARSE 2007-11-06
'Changed PM_DISABLE_RECALIBRATEWIFF 2007-11-07
'Changed PM_RECALIBCONSTANTS_EXTRADECIMALS 2007-11-07
'Changed PM_REFACTOR 2007-11-07
'Changed PM_RECALIB_AFTERPARSE 2007-11-07
'Changed PM_HIGHERSCORES_MS3_AND_PTM 2007-11-13
'Changed PM_REFACTOR 2007-11-14
'Changed PM_PERFILE_RECALIBRATION 2007-11-14
'Changed PM_EXCLUDEDSTATS_RECALIBRATION 2007-11-16
'Changed PM_MARKER_EXPORT_ALL_RECALIB_CONSTANTS 2007-11-16
'Changed PM_PERFILE_RECALIBRATION 2007-11-16
'Changed PM_RAWFILE_PEPFILTER 2007-11-16
'Changed PM_PLOTSPACE 2007-11-17
'Changed PM_RAWFILE_PEPFILTER 2007-11-17
'Changed PM_EXPORT_RAWFILEID 2007-11-19
'Changed PM_EXPORT_LINESPACER 2007-11-19
'Changed PM_PERFILE_RECALIBRATION 2007-11-19
'Changed PM_REFACTOR 2007-11-19
'Changed PM_TYPESAFE 2007-11-20
'Changed PM_REFACTOR 2007-11-23
'Changed PM_READPARSINGRULES 2007-11-23
'Changed PM_RECALIB_VISUAL_BINNING_BROKEN 2007-11-26
'Changed PM_PARSINGREPORT_FAILS_MB3 2007-11-26
'Changed PM_RECALIB_VISUAL_SELECTED_PROTEINS_IN_TITLE 2007-11-26
'Changed PM_REFACTOR 2007-11-30
'Changed PM_MARKER_UNITTEST 2007-11-30
'Changed PM_RECALIB_VISUAL_TRENDLINE 2007-12-05
'Changed PM_PROGRESS_TROUBLE 2007-12-05
'Changed PM_REFACTOR 2007-12-05
'Changed PM_RECALIB_VISUAL_TRENDLINE 2007-12-07
'Changed PM_MARKER_OUTLIERDETECTION 2007-12-07
'Changed PM_REFACTOR 2007-12-10
'Changed PM_REFACTOR 2007-12-12
'Changed PM_RECALIB_OUTLIERDETECTION 2007-12-12
'Changed PM_MARKER_REDUCTORSCRIPT_TROUBLE 2007-12-14
'Changed PM_MARKER_NOELUTIONFORBLACKPEPTIDES 2007-12-14
'Changed PM_PARSE_QUERYNUMBER_EARLIER 2007-12-14
'Changed PM_MARKER_PARSE_OPTIMISATION_OPPORTUNITY 2007-12-14
'Changed PM_REDUCTORSCRIPT_SUPPORT 2007-12-17
'Changed PM_OFFCLICKPEPTIDE_NOQUANTSPECTRA 2007-12-18
'Changed PM_RETURN_KEY_OPEN_SPECTRUMLINE 2008-01-02
'Changed PM_REFACTOR 2008-01-02
'Changed PM_HIDE_RECALIBVISUALISATION_WINDOW 2008-01-06
'Changed PM_OLDEROPTIONSFILES_ERRDETECT 2008-01-06
'Changed PM_HIGHER_PTM_SCORE 2008-01-08
'Changed PM_QSTAR_TROUBLE 2008-01-11
'Changed PM_RESIZE_MAINWINDOW 2008-01-14
'Changed PM_CHECK_CONTAININGFOLDER_EXISTENCE 2008-01-14
'Changed PM_REFACTOR 2008-01-15
'Changed PM_LIMIT_PTMCOMBINATIONS 2008-01-15
'Changed PM_QTSAR_TROUBLE 2008-01-16
'Changed PM_LCPROFILE_MODERNPLOT 2008-01-22
'Changed PM_DIMMED_EMPTYSELECTION_SAVESPECIAL 2008-01-22
'Changed PM_DECIMAL_MINUTES 2008-01-22
'Changed PM_REFACTOR 2008-01-22
'Changed PM_MARKER_APPENDFORMATSTRINGBUILDER 2008-01-25
//Changed PM_REFACTOR 2008-01-29
'Changed PM_MARKER_FOR_MB4 2008-01-30
'Changed PM_REFACTOR 2008-01-29
'Changed PM_MARKER_MEMORY_EFFICIENCY 2008-01-30
'Changed PM_MARKER_ISOTOPEDISTRIBUTION_PLOT 2008-01-30
'Changed PM_ISOTOPEDISTRIBUTION_PLOT 2008-01-30
'Changed PM_LCPROFILE_MODERNPLOT_LOGSCALE 2008-01-31
'Changed PM_ISOTOPEDISTRIBUTION_PLOT 2008-01-31
'Changed PM_MARKER_FOR_MB4 2008-01-31
'Changed PM_QUANT_ISOTOPES 2008-01-31
'Changed PM_RAWFILE_PARSING_BUG 2008-02-04
'Changed PM_MARKER_TITLELINEDEFINITIONS 2008-02-05
'Changed PM_MISSINGTRAILING_FROM_DTASC 2008-02-05
'Changed PM_ACCEPT_UPPER_CASE 2008-02-05
'Changed PM_REFACTOR 2008-02-05
'Changed PM_ERRMESSAGE_OLD_XCALIBUR_VERSION 2008-02-05
'Changed PM_MARKER_MISSING_COPY_OF_STRUCT_FIELD 2008-02-05
'Changed PM_QUANT_ASSERT_JH 2008-02-05
'Changed PM_MARKER_FOR_MB4 2008-02-06
'Changed PM_READ_TITLELINEDEFINITIONS 2008-02-07
'Changed PM_MARKER_FOR_MB4_TOMARK 2008-02-07 -<find in code first> Recalibration constants, including one set per raw file and type (classic, frequency, etc.)
'Changed PM_PERSIST_RECALIBTYPE 2008-02-08
'Changed PM_XMLCOMMENTS_LINEBREAK 2008-02-08
'Changed PM_PARSEFORMAT_OVERALL_COMMENT 2008-02-08
'Changed PM_RAWFILEORPERIOD_DEPRECATED 2008-02-08
'Changed PM_DTASC_COMPILE 2008-02-11
'Changed PM_QUANTEXPORT_CRASH 2008-02-13
'Changed PM_PM_LCPROFILE_MODERNPLOT_FEWER_DECIMALS 2008-02-14
'Changed PM_MARKER_USEOF_APPENDFORMAT 2008-02-14
'Changed PM_3DECIMALS_FOR_RETT 2008-02-14
'Changed PM_BACKCOLOUR_FOR_ZOOMRECTANGLE 2008-02-14
'Changed PM_ORBI_AWARE_RECALIB 2008-02-14
'Changed PM_BACKCOLOUR_FOR_ZOOMRECTANGLE 2008-02-15
'Changed PM_ORBI_AWARE_RECALIB 2008-02-15
'Changed PM_RT_OUT_OF_FILE 2008-02-25
'Changed PM_BACKCOLOUR_FOR_ZOOMRECTANGLE 2008-02-26
'Changed PM_REFACTOR 2008-02-28
//Changed PM_REFACTOR 2008-02-28
'Changed PM_RECALIB_VISUAL_PLOTX_THEO_MCR 2008-02-28
'Changed PM_RECALIB_VISUAL_BYRETENTIONTIME 2008-02-28
'Changed PM_PARSE_MEMORY_EFFICIENCY 2008-02-29
'Changed PM_ALLOW_PROTEINS_WITH_ONLY_D_PEPTIDES 2008-02-29
'Changed PM_HIGHESTUNIQUELY_BADVALUES 2008-02-29
'Changed PM_REFACTOR 2008-03-03
'Changed PM_BUG_TOO_FEW_PEPTIDES_FOR_RAWFILE 2008-03-03
'Changed PM_BINNINGBUG_RECALIB_VISUAL 2008-03-04
'Changed PM_RETT_CORR_BUG 2008-03-05
'Changed PM_AK_QUANT_CRASH 2008-03-05
'Changed PM_CORR_TROUBLE 2008-03-06
'Changed PM_RECALIB_VISUAL_AVOID_Y1000SCALING 2008-03-06
'Changed PM_REFACTOR 2008-03-12
'Changed PM_RECALIB_VISUAL_CLICK_TO_PEPTIDEINFO 2008-03-12
'Changed PM_MARKER_FOR_MB4_TOMARK 2008-03-13 -<find in code first> n and k for PTM scoring.
'Changed PM_MARKER_FOR_MB4_TOMARK 2008-03-13 Signature and MB version stored in MB4 files. E.g. "__APP_SHORTTERM_DOCUMENT_FILE_" and "4". Perhaps application version (that saved it).
//Changed PM_TYPESAFE 2008-03-13
//Changed PM_CSHARP 2008-03-13
//Changed PM_CSHARP_NO_REDIM 2008-03-13
//Changed PM_CSHARP_DETECTED_PROBLEM 2008-03-13
//Changed PM_CINT_TROUBLE 2008-03-19
//Changed PM_REFACTOR 2008-03-25
'Changed PM_RECALIB_REALITY_CHECK 2008-03-26
'Changed PM_RECALIB_REALITY_CHECK 2008-03-27
'Changed PM_TERMMOD_IN_QUANTMODES 2008-03-28
'Changed PM_TERMMOD_IN_QUANTMODES 2008-04-01
'Changed PM_RAW2MSM_COMPATIBLE 2008-04-01
'Changed PM_REFACTOR 2008-03-25
'Changed PM_SPECTRUM_SCROLL_BUG 2008-04-02
'Changed PM_RETRIEVE_PROTEIN_SEQUENCES 2008-04-07
'Changed PM_MARKER_FOR_MB4 2008-04-14
'Changed PM_RETRIEVE_PROTEIN_SEQUENCES 2008-04-14
'Changed PM_RETRIEVE_PROTEIN_SEQUENCES 2008-04-15
'Changed PM_MARKER_FOR_MB4 2008-04-15
'Changed PM_SEQUENCE_COVERAGE 2008-04-15
'Changed PM_DESIGNER_TROUBLE 2008-04-16
'Changed PM_REFACTOR 2008-04-16
'Changed PM_WARNINGS_RESOLUTION 2008-04-16
'Changed PM_MARKER_FOR_MB4 2008-04-16
'Changed PM_SEQUENCE_COVERAGE 2008-04-16
'Changed PM_COLUMNALIGNMENT 2008-04-16
'Changed PM_PARSEREPORT_IDCOUNT 2008-04-21
'Changed PM_RETRIEVE_PROTEIN_SEQUENCES_FASTER 2008-04-22
'Changed PM_MARKER_REFACTOR_OPPORTUNITY 2008-04-24
'Changed PM_SPECTRUM_SCROLL_BUG 2008-04-24
'Changed PM_CLOSE_FILE_BUG 2008-04-24
'Changed PM_REFACTOR 2008-04-30
'Changed PM_QUANTWINDOWS_SELECTION 2008-04-30
'Changed PM_REFACTOR 2008-05-01
'Changed PM_QUANTWINDOWS_SELECTION 2008-05-01
'Changed PM_OPENDELAY_QUANTWINDOW 2008-05-05
'Changed PM_DEADCODE 2008-05-05
'Changed PM_GI_ACCNUM_TROUBLE 2008-05-05
'Changed PM_REFACTOR 2008-05-05
'Changed PM_QUANTWINDOWS_SELECTION 2008-05-05
'Changed PM_SPECTRAEXPORT_GENERALISED 2008-05-05
'Changed PM_DEADCODE 2008-05-06
'Changed PM_SPECTRAEXPORT_GENERALISED 2008-05-06
'Changed PM_PSP_S 2008-05-07
'Changed PM_GENERALISED_IONSERIES 2008-05-08
'Changed PM_REFACTOR 2008-05-08
'Changed PM_GENERALISED_IONSERIES 2008-05-09
'Changed PM_REFACTOR 2008-05-09
'Changed PM_REFACTOR 2008-05-10
'Changed PM_GENERALISED_IONSERIES 2008-05-12
'Changed PM_DEADCODE 2008-05-13
'Changed PM_REFACTOR 2008-05-13
'Changed PM_REFACTOR 2008-05-14
'Changed PM_DISABLE_EXPORT 2008-05-14
'Changed PM_REFACTOR 2008-05-16
'Changed PM_REFACTOR 2008-05-17
'Changed PM_REFACTOR 2008-05-18
'Changed PM_FRAGMENTDISPLAY 2008-05-18
'Changed PM_DISPLAYQUANTITATED_MISSING 2008-05-18
'Changed PM_FRAGMENTDISPLAY 2008-05-18
'Changed PM_UNITTESTS 2008-05-20
'Changed PM_FRAGMENTDISPLAY 2008-05-18
'Changed PM_MATCH_PRECURSOR 2008-05-20
'Changed PM_CHARGE_IN_PROTVAL 2008-05-20
'Changed PM_MASS_CORRECTIONS 2008-05-20
'Changed PM_REFACTOR 2008-05-20
Use of chargeTransform().
'Changed PM_LIMIT_PTMCOMBINATIONS_REAL 2008-05-21
'Changed PM_LASTFRAGMENTSPECTRUM_INFILE_ASSERT 2008-05-22
'Changed PM_EXPORT_TROUBLE 2008-05-22
'Changed PM_PTMSCORE_TROUBLE 2008-05-22
'Changed PM_PTMEXPORT_PERFORMANCE 2008-05-22
'Changed PM_MB3_RELOCATION 2008-05-23
'Changed PM_PTMSCORE_TROUBLE 2008-05-23
'Changed PM_MASSMARKERS_ACCUMULATING 2008-05-23
'Changed PM_BINNING_INFINITY 2008-05-26
'Changed PM_ION_SERIES_DISPLAYOPTION 2008-05-26
'Changed PM_NEW_DISPLAYLEVEL_ION_SERIES 2008-05-26
'Changed PM_BROKENEXPORT 2008-05-28
'Changed PM_REFACTOR 2008-05-29
'Changed PM_CONVENIENCE 2008-05-30
'Changed PM_REFACTOR 2008-05-30
//Changed PM_POSEXCLUDING_MODS 2008-06-17
'Changed PM_POSEXCLUDING_MODS 2008-06-17
'Changed PM_REFACTOR 2008-06-18
'Changed PM_POSEXCLUDING_MODS 2008-06-18
'Changed PM_POSEXCLUDING_MODS 2008-06-19
'Changed PM_MARKER 2008-06-23
//Changed PM_MARKER_PRECURSORCHARGE_SPECIFICATION 2008-06-23
//Changed PM_REFACTOR 2008-06-23
//Changed PM_MARKER_SPECTRUMCLASSIFICATION 2008-06-23
//Changed PM_GENERALISED_IONSERIES_SPECTRUMCLASSIFICATION 2008-06-23
//Changed PM_REFACTOR 2008-06-24
//Changed PM_GENERALISED_IONSERIES_SPECTRUMCLASSIFICATION 2008-06-24
'Changed PM_GENERALISED_IONSERIES_SPECTRUMCLASSIFICATION 2008-06-24
//Changed PM_ETD_SUPPORT 2008-06-24
'Changed PM_PARSING_ACCEPTNONEMATCH 2008-06-24
'Changed PM_DISPLAY_SCORE 2008-06-25
'Changed PM_REFACTOR 2008-06-25
'Changed PM_FRAGMENTS_BOUNDARY_BUG 2008-06-25
'Changed PM_SINGLEPOINTMS_QUANTITATION 2008-06-25
'Changed PM_MARKER_FOR_MB4 2008-06-30
'Changed PM_SAVEMB4_QUESTIONS 2008-06-30
'Changed PM_REFACTOR 2008-06-30
'Changed PM_EXCLUDE_MODFILTER 2008-06-30
'Changed PM_MICROMASS_BROKEN 2008-07-04
'Changed PM_MICROMASS_QUANTREOPEN_BUG 2008-07-08
'Changed PM_HIGHERDIMENSION 2008-07-11
'Changed PM_MARKER_QUANTITATION_EFFICIENCY 2008-07-14
'Changed PM_MISPLACED_CODE 2008-07-14
'Changed PM_LESS_QUANT_UPDATE 2008-07-14
'Changed PM_ASSERT_MAXY 2008-07-14
'Changed PM_ID_SILACDISH 2008-07-15
'Changed PM_PEPTIDEQUANTVALUES_FORZAPPED 2008-07-16
'Changed PM_EFFICIENCY 2008-07-16
'Changed PM_FOCUS_QUANTPEPTIDELIST 2008-07-16
'Changed PM_QUANTPEPTIDES_SORTORDER 2008-07-16
'Changed PM_QUANTPEPTIDES_TWO_SELECTED_BUG 2008-07-16
'Changed PM_QUANTPEPTIDES_NOT_FIRST_SELECTED_BUG 2008-07-16
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-07-22
'Changed PM_MS3_DISPLAY_BROKEN 2008-07-22
//Changed PM_MS3_PHOSLOSS_FRAGMENTS 2008-07-23
'Changed PM_REALLY_LIMIT_PTM_OUTPUT_TO_50 2008-07-23
'Changed PM_EXPORT_MISSED_CLEAVAGE 2008-07-24
//Changed PM_UNITTEST_PASS 2008-07-24
//Changed PM_REFACTOR 2008-07-24
//Changed PM_ACCURATE_MASS 2008-07-24
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-07-29
'Changed PM_BROWSE_FILES_RELOCATEDIALOG 2008-07-30
'Changed PM_RELOCATEDIALOG_NOEXTRADIALOGS 2008-07-30
'Changed PM_HELPER_APPLICATIONS 2008-07-30
'Changed PM_LIMIT_PTM_OUTPUT_TO_32KB 2008-07-30
'Changed PM_REFACTOR 2008-08-21
'Changed PM_OPEN_HELPERAPPLICATIONS_FOLDER 2008-08-21
'Changed PM_TWOLEVEL_WINDOWNUMBERING_PREFIX 2008-08-21
'Changed PM_HELPER_APPLICATIONS 2008-08-21
'Changed PM_AVOID_EXCEL 2008-08-21
'Changed PM_AVOID_EXCEL 2008-08-22
'Changed PM_COMMANDLINE_EXPORT 2008-08-22
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-08-24
//Changed PM_HIGHER_LEVEL_PROCESSING 2008-08-24
//Changed PM_HIGHER_LEVEL_PROCESSING 2008-08-27
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-08-30
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-09-01
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-09-02
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-09-03
//Changed PM_HIGHER_LEVEL_PROCESSING_SPACE_SEPERATOR 2008-09-03
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-09-04
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-09-07
'Changed PM_LONGER_EMPTY_XMLCOMMENT 2008-09-09
'Changed PM_STOPASSERT_IN_EXPORTDIALOG 2008-09-09
'Changed PM_UPPERCASE_MODNAME_WARNING 2008-09-09
'Changed PM_PERFORMANCE 2008-09-09
'Changed PM_TOOMANY_QUANT_PEPTIDES_BUG 2008-09-10
'Changed PM_ZAPPED_QUANTITATED_ON_OPEN_QUANTWINDOW 2008-09-12
'Changed PM_PARSEREPORT_EMPTYLINES 2008-09-12
'Changed PM_PERFORMANCE_QUANTITATION 2008-09-14
'Changed PM_MAIN_ZOOM_MOVE_RAWFILELABEL 2008-09-14
'Changed PM_APPROPRIATE_MAX_DEFAULT_LCTIME 2008-09-14
//Changed PM_EXPORT_TEMPFILES_IN_APPFOLDER 2008-09-14
'Changed PM_HELPER_APPLICATIONS 2008-09-15
'Changed PM_READVALUES_DIMENSION_DIALOG 2008-09-15
'Changed PM_INDEXOFOUTRANGE_EARLY_DETECT 2008-09-15
'Changed PM_DELAY_OPENRAWFILE 2008-09-15
'Changed PM_AUTOEXPORT_BUG 2008-09-15
'Changed PM_AUTOEXPORT_BUG_EXPORTED_ALL_PROTEINS 2008-09-15
//Changed PM_EXPORT_TEMPFILES_IN_APPFOLDER 2008-09-15
//Changed PM_DTASC_COMPILE 2008-09-15
'Changed PM_CORRREPORT_NODATA_IN_MB3 2008-09-18
'Changed PM_CORRREPORT_CHOKE_EQUALSIGNS 2008-09-19
'Changed PM_TYPESAFE_HASH 2008-09-25
'Changed PM_REFACTOR 2008-09-25
'Changed PM_WRONG_PROTEINS 2008-09-25
'Changed PM_MEMORY_EFFICIENCY 2008-09-25
'Changed PM_EXPORTED_FEEDBACK 2008-09-25
'Changed PM_TIMESTAMP_EXPORT 2008-09-25
//Changed PM_HIGHER_LEVEL_PROCESSING 2008-09-26
'Changed PM_HIGHER_LEVEL_PROCESSING 2008-09-26
'Changed PM_SELECTED_PROTEINS_SPEED 2008-09-26
'Changed PM_PCP_PLOT 2008-09-29
'Changed PM_REFACTOR 2008-09-29
'Changed PM_NO_BYVAL 2008-09-29
//Changed PM_PCP_PLOT 2008-09-30
'Changed PM_PCP_PLOT 2008-09-30
'Changed PM_MB3LOAD_SPEEDUP 2008-10-01
'Changed PM_PCP_PLOT 2008-10-01
'Changed PM_PCP_PLOT 2008-10-02
'Changed PM_PCP_PLOT_RESIZE 2008-10-02
'Changed PM_REFACTOR 2008-10-02
'Changed PM_SILACDISH_UNIQUELY_HIGHEST_SCORING 2008-10-02
'Changed PM_MEMORY_EFFICIENCY 2008-10-03
'Changed PM_SIMONLY_WARNING 2008-10-03
'Changed PM_RECALIBVIS_FEEDBACK 2008-10-03
'Changed PM_KERATIN_WARNING 2008-10-03
'Changed PM_NO_EMPAI 2008-10-03
'Changed PM_PCP_PLOT_YLOG 2008-10-03
'Changed PM_SILAC_AWARE_PEPTIDEFILTERDIALOG 2008-10-05
'Changed PM_REFACTOR 2008-10-06
//Changed PM_SILAC_AWARE_PEPTIDEFILTERDIALOG 2008-10-06
'Changed PM_SILAC_AWARE_PEPTIDEFILTERDIALOG 2008-10-06
'Changed PM_EXPORT_RAWFILEMAPPING_BUG 2008-10-07
'Changed PM_PARSE_SLOPETRANSFORMATION 2008-10-07
'Changed PM_EXTERNAL_SMARTPICKING_PARAMETERS 2008-10-08
'Changed PM_SILAC_AWARE_PEPTIDEFILTERDIALOG 2008-10-08
'Changed PM_REFACTOR 2008-10-08
//Changed PM_REFACTOR 2008-10-09
//Changed PM_PERSIST_IONSERIES 2008-10-09
'Changed PM_PERSIST_IONSERIES 2008-10-09
'Changed PM_REFACTOR 2008-10-09
//Changed PM_PERSIST_IONSERIES 2008-10-10
'Changed PM_REFACTOR 2008-10-11
'Changed PM_QUANTMODE_WARNING_CLEARED 2008-10-11
'Changed PM_REFACTOR 2008-10-14
'Changed PM_OPENHIT_CALIBRATED_MASSERRORS 2008-10-14
'Changed PM_KEEP_PROTEIN_COLOURS 2008-10-14
'Changed PM_MEMORY_EFFICIENCY 2008-10-14
'Changed PM_PCP_PLOT_OPENPROTEIN 2008-10-14
'Changed PM_PCP_PLOT_SEVERAL_DISHES 2008-10-15
'Changed PM_PCP_PLOT_SEVERAL_DISHES 2008-10-16
'Changed PM_FEWERBOXES_SILACDISH_MISMATCH 2008-10-16
//Changed PM_WINDOWS_CLIPBOARD_TROUBLE 2008-10-16
'Changed PM_KEYSORTED_PARSEREPORT 2008-10-19
'Changed PM_TYPESAFE_HASH 2008-10-19
'Changed PM_REFACTOR 2008-10-19
'Changed PM_NOFILLER 2008-10-19
'Changed PM_TYPE_SYMMETRY 2008-10-20
'Changed PM_SAMPLEMASCOTLINES_FOR_RECOGNISED_MODIFICATION 2008-10-20
'Changed PM_PARSEREPORT_PREPEND_EMPTYLINES 2008-10-20
'Changed PM_BELARUS_EMPTY_FRAGMENT_SPECTRA_DUE_TO_RAW2MSM_BUG 2008-10-21
'Changed PM_RESULT_VIEWER_INTEGRATION 2008-10-21
//Changed PM_LEVEL_FOR_MATCHED_DOUBLE_YIONS 2008-10-22
'Changed PM_EXPANDED_MSG_MISSING_EXPERIMENT_POINT 2008-10-22
'Changed PM_APPARENT_IDENTICAL_ZERO 2008-10-22
'Changed PM_PCP_PLOT_SILACFILTER_GUI 2008-10-24
'Changed PM_QUANT_SPEED_SPECNUM_2NDKEY 2008-10-27
'Changed PM_CODEMARKER 2008-10-27
'Changed PM_MEMORY_EFFICIENCY 2008-10-27
'Changed PM_FINNIGANWRAPCOM_VERSIONCHECK 2008-10-27
'Changed PM_REFACTOR 2008-10-27
'Changed PM_PROTEIN_TAGS 2008-10-29
'Changed PM_REFACTOR 2008-10-30
//Changed PM_REFACTOR 2008-10-30
//Changed PM_REFACTOR_MARKER 2008-10-30
//Changed PM_REFACTOR_OUT_IS_YOUR_FRIEND 2008-10-30
//Changed PM_UNNECESSARY_OPERATION 2008-10-30
//Changed PM_KEEP_COMPILER_HAPPY 2008-10-30
//Changed PM_CSHARP_DETECTED_PROBLEM 2008-10-30
'Changed PM_REFACTOR 2008-10-31
//Changed PM_CSHARP_DETECTED_PROBLEM 2008-10-31
//Changed PM_REFACTOR_MARKER 2008-10-31
//Changed PM_BLANK_PEPTIDE_PROBLEMS 2008-10-31
//Changed PM_DISABLE_OLD_SERIALISATION 2008-10-31
//Changed PM_REFACTOR 2008-10-31
//Changed PM_REFACTOR_PCP 2008-10-31
'Changed PM_REFACTOR_PCP 2008-10-31
//Changed PM_SHORTCIRCUIT_BOOL 2008-11-04
'Changed PM_PCP_PLOT_TAGGING 2008-11-04
'Changed PM_PCP_CONSENSUS_PROFILE 2008-11-05
//Changed PM_PCP_CONSENSUS_PROFILE 2008-11-05
'Changed PM_REFACTOR 2008-11-05
'Changed PM_PCP_CONSENSUS_PROFILE 2008-11-05
'Changed PM_MARKER_FOR_MB4 2008-11-06
//Changed PM_MARKER_FOR_MB4 2008-11-06
'Changed PM_PCP_CONSENSUS_PROFILE 2008-11-06
'Changed PM_REFACTOR 2008-11-06
'Changed PM_TYPESAFE_HASH 2008-11-06
'Changed PM_COLUMNSORT_BY_KEYBOARD 2008-11-06
'Changed PM_COLUMNSORT_BY_KEYBOARD 2008-11-07
'Changed PM_PROTEIN_TAGS_USERDEFINED 2008-11-07
'Changed PM_COLUMNSORT_BY_KEYBOARD_FLATTEN 2008-11-08
'Changed PM_UNSELECT_ALL 2008-11-08
'Changed PM_ALTERNATE_SORT_DIRECTION 2008-11-08
'Changed PM_PCP_PLOT_EMPTYQUANTRESULT_CRASH 2008-11-08
'Changed PM_REFACTOR 2008-11-11
'Changed PM_COLUMNSORT_BY_KEYBOARD 2008-11-11
'Changed PM_PRINT_SPECTRUMTYPES 2008-11-11
'Changed PM_CONSENSUSSCORE_ALLDISHES 2008-11-11
//Changed PM_CONSENSUSSCORE_ALLDISHES 2008-11-11.
//Changed PM_MB4_VERSIONING 2008-11-12
//Changed PM_MARKER_FOR_MB4 2008-11-12
'Changed PM_MB4_VERSIONING 2008-11-12
'Changed PM_REFACTOR 2008-11-12
'Changed PM_MEMORY_EFFICIENCY 2008-11-12
'Changed PM_MB4_VERSIONING 2008-11-13
'Changed PM_DEADCODE_COM_ANALYST 2008-11-14
'Changed PM_CODEMARKER 2008-11-17
'Changed PM_SAVE_RAWFILE_MAPPING_MB4 2008-11-17
//Changed PM_SAVE_RAWFILE_MAPPING_MB4 2008-11-17
'Changed PM_REFACTOR 2008-11-17
//Changed PM_REFACTOR 2008-11-17
'Changed PM_REFACTOR 2008-11-18
'Changed PM_SAVE_RAWFILE_MAPPING_MB4 2008-11-18
'Changed PM_CODEMARKER 2008-11-20
'Changed PM_SHARED_DIMENSIONSETTINGS_BUG 2008-11-20
'Changed PM_SAVE_ALLRECALIB_MB4 2008-11-21
//Changed PM_SAVE_ALLRECALIB_MB4 2008-11-21
'Changed PM_CODEMARKER_CALIBPEPTIDES 2008-11-21
'Changed PM_PROPER_MB3_SAVEDIALOG 2008-11-24
'Changed PM_SAVE_ALLRECALIB_MB4 2008-11-24
'Changed PM_ELIMINATE_PEPTIDEFIELD 2008-11-25
//Changed PM_ELIMINATE_PEPTIDEFIELD 2008-11-25
'Changed PM_MASCOTSCORE_ASDOUBLE 2008-11-25
//Changed PM_MASCOTSCORE_ASDOUBLE 2008-11-25
'Changed PM_SER_DESER_CHECK 2008-11-25
'Changed PM_PEPTIDEFIELD_USEDFORRECALIBRATION 2008-11-25
//Changed PM_PEPTIDEFIELD_USEDFORRECALIBRATION 2008-11-25
'Changed PM_SAVE_ALLRECALIB_MB4 2008-11-25
//Changed PM_SAVE_ALLRECALIB_MB4 2008-11-25
//Changed PM_MB3_BROKEN 2008-11-27
'Changed PM_PCP_PLOT_NOTSTAR 2008-11-27
'Changed PM_NARROW_ONEOVERONE_COLUMNS 2008-11-27
'Changed PM_REFACTOR 2008-11-27
'Changed PM_TYPESAFE 2008-11-27
//Changed PM_EXTENDED_CONSENSUSSCORE 2008-11-27
//Changed PM_EXTENDED_CONSENSUSSCORE 2008-11-28
'Changed PM_EXTENDED_CONSENSUSSCORE 2008-11-28
'Changed PM_THRESHOLD_IDENTICALZERO 2008-11-30
'Changed PM_IDENTICALZERO_IN_SCORING 2008-11-30
//Changed PM_CONSENSUSSCORE 2008-11-30
'Changed PM_CONSENSUSSCORE_LOGTRANSFORMED 2008-11-30
'Changed PM_CONSENSUSSCORE_LINEAR 2008-12-01
'Changed PM_REFACTOR_TROUBLE 2008-12-01
'Changed PM_REFACTOR 2008-12-01
//Changed PM_REFACTOR 2008-12-01
'Changed PM_REFACTOR 2008-12-01
'Changed PM_MODMATCH_BEGINNING_BUG 2008-12-01
//Changed PM_MODMATCH_BEGINNING_BUG 2008-12-01
'Changed PM_TYPESAFE 2008-12-02
'Changed PM_TYPESAFE 2008-12-03
'Changed PM_MEMORY_EFFICIENCY 2008-12-03
'Changed PM_TWOLEVEL_WINDOWNUMBERING_PREFIX 2008-12-03
'Changed PM_20PERCENT_CONSENSUS 2008-12-03
'Changed PM_CONSENSUSSCORE_NEW 2008-12-05
'Changed PM_LEFTOUT_GUICOLUMNS_BUG 2008-12-05
'Changed PM_LCPEAKDECTION_NAMING 2008-12-09
'Changed PM_SORT_BY_SELECTION_AND_CHECKED 2008-12-09
'Changed PM_SELECT_FROM_EXTERNAL 2008-12-09
'Changed PM_SAVE_ASSERT 2008-12-10
//Changed PM_SAVE_ASSERT 2008-12-10
'Changed PM_SELECT_FROM_EXTERNAL 2008-12-12
'Changed PM_REFACTOR 2008-12-12
//Changed PM_REFACTOR 2008-12-12
'Changed PM_BROKENOPEN_FROM_RECALIBVIS 2008-12-12
'Changed PM_SEQUENCE_COVERAGE 2008-12-16
'Changed PM_SECOND_RE_RECALIB_BUG 2008-12-17
'Changed PM_REFACTOR 2008-12-18
'Changed PM_DIMENSIONDLG_BUG 2008-12-18
'Changed PM_EXPORT_TO_ANY_RAWFILEMAPPINGDLG 2008-12-18
//Changed PM_ASKFOR_EXPORTTARGET_FIRSTTIME 2008-12-18
'Changed PM_ASKFOR_EXPORTTARGET_FIRSTTIME 2008-12-18
'Changed PM_MORE_XML_COMMENTS 2008-12-18
'Changed PM_REFACTOR 2008-12-19
//Changed PM_OPENOFFICE3 2008-12-19
'Version 1.5 official!!!!: 2008-12-19
'***************************************************************************
'`HHHHHHHHHHHHHHHHHHHHHHHHh A marker for easy navigation in this file...
-bin "S:\temp2\Export trouble,2,QUANTMODE_RK double triple.mb2" -quant 280-290
Old command lines:
1. -zbin "S:\temp2\q,LTQ-FTsampleDataSet1,1,QUANTMODE_No isotope.mb2" -quant 7-19
Use this one?:
'****************************************************************************
'* <placeholder for header> *
'****************************************************************************
From Wish List:
The application -filters for pruning out ZZZ peptides, very short
peptides, singly charged peptides prior to quantitation
[2006.03 – BAB, JA].
Class SortPeptideBySequenceAndByScoreComparer
'***************************************************************************
FUTURE_SECTION:
5. xyz
'***************************************************************************
'HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
To add new quantitation mode:
1. Add new enumeration to Enum quantModeEnum. File: MMConstModule.vb
For user interface:
2. Add user interface string in function quantStrings().
File: frmOptions.vb. If not inserted at the end
then the constants in 3) should be changed accordingly.
3. Add a new constant in file frmOptions.vb, close
to "Private Const LISTINDEX_ARGLYS6".
4. Add case in function quantModeListIndex2enum().
File frmOptions.vb
5. Add case in function quantModeEnum2ListIndex().
File frmOptions.vb
6. Add case in QuantModeClassification(), file FindLCpeaks.vb
Add new field(s) to modHitStructure, like numArg13C6C10:
6. Add new field(s) to modHitStructure, file clsQuerySQL.vb
7. Reset field(s) in resetModFields(), file MascotResultParser.vb
8. Add matcher(s) in ParsePeptMatch(),
The existing ones: formatMods
"\S+\s+\(R-13C6\)" numArgC13 " Arg6"
"\S+\s+\(R-full\)" numArg13C6C10 " Arg10"
"\S+\s+\(K-13C6\)" numLysC13 " Lys6"
"Leu" numLeuD3 " Leu-d3"
"Oxidation" numMetOx " Met(ox)"
"Hys\s+tag_D0" numCysHystag_D0 " CysHy0"
"Hys\s+tag_D4" numCysHystag_D4 " CysHy4"
"Carbamidomethyl" <special, cysMod = True> " Cys mod"
New:
"Lysine\s+\(D4\)" numLysD4 " Lys4"
"\S+\s+\(K-full\)" numLysFull " Lys8"
9. Add block in formatMods(), MascotResultParser.vb
10. Add counter to structure multModCounterStructure, file FindLCpeaks.vb.
11. Reset counter in Parse(), file MascotResultParser.vb
12. Add warning block in Parse(), file MascotResultParser.vb (as
for mMultModCounter.Arg6Arg10Counter).
13. Foster: EnterPeptides() in clsQuerySQL.vb.
14. STOP!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Why stop? This is only
for quantitation. See below
for a list of general tasks,
e.g. refactorings to be
carried out.
********************'HHHHHHHHHHHHHHH********************************
'HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
'***************************************************************************
'Navigation:
' Marker File Function What
'-----------------------------------------------------------------------------------------------------------
' CCCCC frmMainForm.vb frmMainForm_Load() Default for quantitation mode (Tools/Options dialog.)
' DDDDD QuantWindow.vb lvPept_DoubleClick() Core quantitation.
' EEEEE QuantWindow.vb DrawLCPeak() Visual presentation of LC peak
'Temporary markers, values are often the same - acts like a group.
' XAXA CysHys
' XBXB Options, modification mode
'
'2002-02-10. Modifications fields in data structure that represents Mascot result file:
' Temp marker File Function/<other> What
' XAXA frmProteinValidation.vb DisplayPeptInfo() ?: displaying mod string in some protein window?
' XAXA MascotResultParser.vb ParseOneProteinHitTable() Resetting the value of the hit structure to some
' fixed values. Why?
' XAXA MascotResultParser.vb ParsePeptMatch()
' XAXA QuantWindow.vb GetLowerAndHigherMZ() Computing 1 possible mass in addition to the
' measured mass.
' And modi diff, e.g. 6 Da (R/6*C12-C13) or
' 4 Da (C/4*DEU-H).
' XAXA MascotResultParser.vb Structure modHitStructure, modHit in MolecularSharedStructures.PeptideHitStructure
' XAXA QuantWindow.vb FillPeptideListView() Filtering on peptide containing R, C, L, etc.
' And modi diff, e.g. 6 Da (R/6*C12-C13) or
' 4 Da (C/4*DEU-H).
' XAXA
'***************************************************************************************************************
' XBXB frmOptions.vb btnOK_Click() Setting quantMode field from Options dialog.
' XBXB MascotResultParser.vb Mas..Par..OptionsStruct Declaration of the quantMode field, in
' structure OptionsStruct2.
'***************************************************************************
General tasks:
*1. Case fall-through. Done 2003-02-20.
2. Enum start value (value for first enum should be different from 0)
3. In catch clauses: explicit exception object to ease debugging. Add to
Perl script to check for it. "Catch" -> "Catch e As Exception".
4. Standard for enums, e.g. should values be prefixed or be all
capital because they are really like constants?
5. Correct spelling: mnuPorteinCorrectAndMoveToNextProtein_Click
6. Add "Struct" to all Structure's.
7. Eliminate this sequence and put into some kind of wrapper:
Dim someTime As Single = _
mWiffFile.GetActualTimeFromPeriodAndCycle(1, 0, 0, theCycle)
Call mTheData.SetSpectrum( _
mWiffInfo.sample, 0, 0, someTime, someTime)
8. IMPLEMENTED. Refactoring of saving to a file, call pushToFile() instead of
using inline code.
9. Eliminate charge calc, like:
"Dim theCharge As Integer = CInt(thePept.MascotCalculatedMW / thePept.measuredMZ + 0.2)"
10. Refactor lines around this
"txtSpecLst.Text = sumIntWT.ToString("0") & " " & " in
AverageAndStDevFromMSLst().
11. To find out: how does VBDOC handle several namespaces
of the same name in several files?
12. Reduce redundancy for: ".wiff"
13. QuantWindow.vb: Use the quantResultStructure structure for the output
of GetIntegratedPeakIntensityAtMass() - instead of individual parameters.
14. MMConstModule.vb: Capitilize n (second letter) in enumerators for quantModeEnum, e.g. enumArg13C6
15. Replace "vbCr & vbLf" with "PILInputOutput.LINEEND". Or shall we use vbCrLf ????
And replace "vbTab" with "ControlChars.Tab".
Probably best: ControlChars.NewLine,
No!: ControlChars is Visual Basic specific (but more modern)!!
<http://www.msnewsgroups.net/group/microsoft.public.dotnet.languages.csharp/topic35853.aspx>
recommends Environment.NewLine.
<http://www.knowdotnet.com/articles/controlchars.html>
"... the truly .NET way to create a CarriageReturn|LineFeed is
to use Environment.NewLine ... but many other characters aren't present in the Environment namespace."
Visual Basic 6.0 Visual Basic .NET Equivalent
--------------------------------------------------
vbBack ControlChars.Back
vbCr ControlChars.Cr
vbCrLf ControlChars.CrLf
vbFormFeed ControlChars.FormFeed
vbLf ControlChars.Lf
vbNewLine ControlChars.NewLine
vbNullChar ControlChars.NullChar
vbNullString Nothing keyword
vbObjectError vbObjectError
vbTab ControlChars.Tab
Use alias?:
"Imports statements must always be the first lines
immediately following any Option statements in a
module. The following code fragment shows how to
import and assign an alias to the
Microsoft.VisualBasic.ControlChars module:
Imports CtrlChrs = Microsoft.VisualBasic.ControlChars
MsgBox("Some text" & CtrlChrs.CrLf & "Some more text")
Or what about ?:
From
<http://www.csharpfriends.com/Articles/getArticle.aspx?articleID=94>:
"... I have put Environment.NewLine
constant to create new line. You can use '\r\n'
but it can be different if run on a different
platform like Linux or FreeBSD. The thing that is
really surprising is the existence of this
constant. We all know that Microsoft used to think
that Windows is the only OS in the world."
16. Exchange mA and mB..... Also order in the expressions. Or perhaps longer names.
17. Eliminate use of CType, use DirectCast instead.
18. Remove Project Imports and be explicitly in code (with Imports statements, etc. -
see <http://www.angrycoder.com/blog/entries/20030423.html>)
19. Use try/finally/flStream.Close() to always free resources we have allocated.
21. Complete comments for mSampleNumberInRawFile.
22. Maybe import namespace for quantitationModeStructure
23. Idea: report in corr. report: unmatched modifications (the strings from Mascot result file).
24. For every file: include a copyright notice and license statement (as
recommend by SourceForge.)
25. Perhaps replace &= in
"toReturn &= prefix & curItem.count.ToString & modInfo.formattedString",
MascotResultParser.vb with StringBuild
26. Not setting String fields in PeptideHitStructure during parsing
of the Mascot result file, like "Dim seq1 As String"
27. IMPLEMENTED. Idea: use pool of labels for spectrum
marking instead of deleting and adding new labels at
the all. Deleting would simply be moving the label off
screen. Adding would be to reuse an off-screen moved
label or creating on a new one if noone can be found.
28. Outfactor standard code (see srcTemplate.txt) for reporting
from inside catch
29. Refactor: Use utilityStatic.numbersClose instead of
various inline expressions.
30. Use DirectCast instead of CType in sort classes....
31. Remove properties in classes, especially writes. It breaks encapsulation!!!
32. Remove use of ElseIf
33. Remove double use of rawDataFileHandling in New for frmFinneganSpectra.vb.
34. Correct. Many classes have bad headers, e.g. Class SortByX, "SUBROUTINE NAME: SortByX"
35. Refactor: use loop to check for old settings files, e.g. "spectrumClassification.xml".
Make it in the beginning of frmMainForm_Load() and exit if one or more exists.
The settings can then be loaded unconditionally later in frmMainForm_Load()
36. Decide on one of:
ControlChars.NewLine
vbCrLf
ControlChars.CrLf
and replace everywhere in the program. It should probably
be "ControlChars.NewLine".
37. Refactor out 0.5 for window/delta mass, in QuantWindow.vb:
0.5 * mXICwindow.XICwindowSize(pept2.measuredMZ)
It is used more than 3 times...
38. Instead of case statements on the spectrum type (QSTAR/LTQ-FT/Qtof) make
virtual abstract functions for binary selections or move off to new
separate virtual class tree.
39. Centralised/reduce redundancy: "\r\n".
40. Prepare for transition to C#:
a. Replace "CType" with ?, E.g. in PILinOut.vb.
b. String to number conversion,
e.g. "scoreA = CInt(txtScoreA.Text)" in frmOptions.vb
c. Replace "ControlChars.Tab" with ?
d.
41.
'CCCCCCCCCCCCCCCCCC A marker....
'***************************************************************************
References in project:
Reference Type DLL DLL path
AxGraphControlLib ActiveX GraphControl.ocx D:\Program Files\Analyst\bin\GraphControl.ocx
AxXCALIBURDISPLAYSLib ActiveX XcaliburDisplays.dll D:\Program Files\Xcalibur\system\programs\XcaliburDisplays.dll
DACSERVERLib TypeLib DACServer.dll D:\MassLynx\DACServer.dll
Excel TypeLib XL5EN32.OLB or Z:\Program Files\Microsoft Office\Office\XL5EN32.OLB
EXCEL8.OLB Z:\Program Files\Microsoft Office\Office\EXCEL8.OLB
ExploreDataObjects TypeLib ExploreDataObjects.dll D:\Program Files\Analyst\bin\ExploreDataObjects.dll
GraphControlLib TypeLib GraphControl.ocx D:\Program Files\Analyst\bin\GraphControl.ocx
nunit.extensions TypeLib nunit.extensions.dll D:\Program Files\NUnit V2.0\bin\nunit.extensions.dll
nunit.framework TypeLib nunit.framework.dll D:\Program Files\NUnit V2.0\bin\nunit.framework.dll
XCALIBURDISPLAYSLib TypeLib XcaliburDisplays.dll D:\Program Files\Xcalibur\system\programs\XcaliburDisplays.dll
XCALIBURFILESLib TypeLib xcaliburfiles.dll D:\Program Files\Xcalibur\system\programs\XcaliburFiles.dll
XRAWFILE2Lib TypeLib XRawfile2.dll D:\Program Files\Xcalibur\system\programs\XRawfile2.dll
Enum start values:
start number,
enumeration a prime number File Notes
------------------------- -----------------------------------------------
quantModeEnum 101 MMConstModule.vb
setEnum 211 rawDataFileHandling.vb
isotopesUsedForQuantEnum 223 MascotResultParser.vb
spectrumTypeEnum 227 rawDataFileHandling.vb
rawFileModeEnum 229 MMConstModule.vb
proteinTbItmColEnum2 233 frmProteinList.vb
MSspectrumSubTypeEnum 239 rawDataFileHandling.vb
parsingPhaseEnum 241 MascotResultParser.vb
ENUM_OFFSET_MSTYPES 251 MMConstModule.vb
ionTypeEnum 257 MSbaseData.vb
peptideColEnum2 263 frmProteinValidation.vb
quantPeptTbItmColEnum2 269 QuantWindow.vb
tagEnum 271 frmExportFilters.vb
massWindowFunctionEnum 277 MSQapp.vb
<base value for ID> 281 PTMscorer.vb
elementCodeEnum 283 PILmolecule.vb
sortingDirectionEnum 293 ListViewColumnSorter.vb
proteinValidationCommandEnum 307 frmToolBarProteinValidation.vb
<start value> 311 PILpeptides.vb (iterator tokens, start value)
peptideSortOrderEnum 313 PILpeptides.vb
<PeptideTokenBase> 1993 PILpeptides.vb
specTbItmColEnum 317 QuantWindow.vb
specTbItmColEnum/
enumIntensityBaseNumber 1009 QuantWindow.vb
specTbItmColEnum/
enumRatioBaseNumber 1511 QuantWindow.vb
specTbItmColEnum/
enumMassBaseNumber 1901 QuantWindow.vb
specTbItmColEnum/
enumMassBaseNumber 1201 QuantWindow.vb
quantPeptTbItmColEnum2/
enumRatioBaseNumber2 1103 QuantWindow.vb
quantPeptTbItmColEnum2/
enumRatioStdDevBaseNumber2 1601 QuantWindow.vb
quantPeptTbItmColEnum2/
enumIntensityBaseNumber2 1801 QuantWindow.vb
quantPeptTbItmColEnum2/
enumXICBaseNumber2 1301 QuantWindow.vb
quantPeptTbItmColEnum2/
enumIntensRatioBaseNumber2 2003 QuantWindow.vb
proteinTbItmColEnum/
enumRatioBaseNumber3 1051 frmProteinList.vb
proteinTbItmColEnum/
enumRatioStdDevBaseNumber3 1259 frmProteinList.vb
proteinTbItmColEnum/
enumRatioRelErrBaseNumber3 1451 frmProteinList.vb
retentionTimeTypeEnum 331 retentionTimeCorrelator.vb
????:
enumQuantOffsetBaseNumber = 9999 'For now
task1StatesEnum 337 automator.vb
whichClosestPointTypeEnum 347 AnalystCOM.vb
COMversionEnum 349 rawDataFileHandling.vb
peptideFilterEnum 353 MascotResultParser.vb
MARK_PERMANENT_FILTER (const) -359 PILpeptides.vb
massErrorUnitEnum 367 frmRecalibrationVisualisation.vb
displayModeEnum 373 MMConstModule.vb
massErrorDisplayTypeEnum 379 frmRecalibrationVisualisation.vb
recalibDomainEnum 383 SDUPrecalibrator.vb
<code for all raw files> 389 E.g. in frmPeptideFilters.vb
LCplotTypeEnum 397 QuantWindow.vb
retTplotTypeEnum 401 retentionTimePlotting.vb
labelDirectionEnum 409 SDUPspectrumMarking.vb
<code for ion-type, y> 419
<code for ion-type, b> 421
<code for ion-type, a> 431
<code for ion-type, precursor> 433
targetEnum 439 frmExportFilters.vb
MODFILTERTYPE_INCLUDE 443 frmPeptideFilters.vb
MODFILTERTYPE_EXCLUDE 449 frmPeptideFilters.vb
457 CEBIspaces.cs, computeKey()
HS_EXCLUDEMODS 461
proteinTbItmColEnum/
enumConsensusScore 1709 frmProteinList.vb
enumConsensusNonZeroPoints 2111 frmProteinList.vb
enumPointsWithinConsensus 2203 frmProteinList.vb
specialSortKeyEnum 2309 ListViewColumnSorter.vb
Prime numbers (beyond 1000: from
<From: http://primes.utm.edu/lists/small/millions/primes1.zip>, the
first million!):
2 3 5 7 11 13 17 19 23 29
31 37 41 43 47 53 59 61 67 71 73 79 83 89 97
101 103 107 109 113 127 131 137 139 149 151 157 163 167 173 179 181 191
193 197 199
211 223 227 229 233 239 241 251 257 263 269 271 277 281 283 293
307 311 313 317 331 337 347 349 353 359 367 373 379 383 389 397
401 409 419 421 431 433 439 443 449 457 461 463 467 479 487 491 499
503 509 521 523 541 547 557 563 569 571 577 587 593 599
601 607 613 617 619 631 641 643 647 653 659 661 673 677 683 691
701 709 719 727 733 739 743 751 757 761 769 773 787 797
809 811 821 823 827 829 839 853 857 859 863 877 881 883 887
907 911 919 929 937 941 947 953 967 971 977 983 991 997
1009 1013 1019 1021 1031 1033 1039 1049 1051 1061 1063 1069 1087 1091 1093 1097
1103 1109 1117 1123 1129 1151 1153 1163 1171 1181 1187 1193
1201 1213 1217 1223 1229 1231 1237 1249 1259 1277 1279 1283 1289 1291 1297
1301 1303 1307 1319 1321 1327 1361 1367 1373 1381 1399
1409 1423 1427 1429 1433 1439 1447 1451 1453 1459 1471 1481 1483 1487 1489 1493 1499
1511 1523 1531 1543 1549 1553 1559 1567 1571 1579 1583 1597
1601 1607 1609 1613 1619 1621 1627 1637 1657 1663 1667 1669 1693 1697 1699
1709 1721 1723 1733 1741 1747 1753 1759 1777 1783 1787 1789
1801 1811 1823 1831 1847 1861 1867 1871 1873 1877 1879 1889
1901 1907 1913 1931 1933 1949 1951 1973 1979 1987 1993 1997 1999
2003 2011 2017 2027 2029 2039 2053 2063 2069 2081 2083 2087
2089 2099 2111 2113 2129 2131 2137 2141 2143 2153 2161 2179
2203 2207 2213 2221 2237 2239 2243 2251 2267 2269 2273 2281 2287 2293 2297
2309 2311 2333 2339 2341 2347 2351 2357 2371 2377 2381 2383 2389 2393 2399
2411 2417 2423 2437 2441 2447 2459 2467 2473 2477
2503 2521 2531 2539 2543 2549 2551 2557 2579 2591 2593
2609 2617 2621 2633 2647 2657 2659 2663 2671 2677 2683 2687 2689 2693 2699
2707 2711 2713 2719 2729 2731 2741 2749 2753 2767 2777 2789 2791 2797
2801 2803 2819 2833 2837 2843 2851 2857 2861 2879 2887 2897
2903 2909 2917 2927 2939 2953 2957 2963 2969 2971 2999
3001 3011 3019 3023 3037 3041 3049 3061 3067 3079 3083 3089
3109 3119 3121 3137 3163 3167 3169 3181 3187 3191 3203 3209
3217 3221 3229 3251 3253 3257 3259 3271 3299 3301 3307 3313
3319 3323 3329 3331 3343 3347 3359 3361 3371 3373 3389 3391
3407 3413 3433 3449 3457 3461 3463 3467 3469 3491 3499 3511
3517 3527 3529 3533 3539 3541 3547 3557 3559 3571 3581 3583
3593 3607 3613 3617 3623 3631 3637 3643 3659 3671 3673 3677
3691 3697 3701 3709 3719 3727 3733 3739 3761 3767 3769 3779
3793 3797 3803 3821 3823 3833 3847 3851 3853 3863 3877 3881
3889 3907 3911 3917 3919 3923 3929 3931 3943 3947 3967 3989
4001 4003 4007 4013 4019 4021 4027 4049 4051 4057 4073 4079
4091 4093 4099 4111 4127 4129 4133 4139 4153 4157 4159 4177
4201 4211 4217 4219 4229 4231 4241 4243 4253 4259 4261 4271
4273 4283 4289 4297 4327 4337 4339 4349 4357 4363 4373 4391
4397 4409 4421 4423 4441 4447 4451 4457 4463 4481 4483 4493
4507 4513 4517 4519 4523 4547 4549 4561 4567 4583 4591 4597
4603 4621 4637 4639 4643 4649 4651 4657 4663 4673 4679 4691
4703 4721 4723 4729 4733 4751 4759 4783 4787 4789 4793 4799
4801 4813 4817 4831 4861 4871 4877 4889 4903 4909 4919 4931
4933 4937 4943 4951 4957 4967 4969 4973 4987 4993 4999
5003 5009 5011 5021 5023 5039 5051 5059 5077 5081 5087 5099
5101 5107 5113 5119 5147 5153 5167 5171 5179 5189 5197 5209
5227 5231 5233 5237 5261 5273 5279 5281 5297 5303 5309 5323
5333 5347 5351 5381 5387 5393 5399 5407 5413 5417 5419 5431
5437 5441 5443 5449 5471 5477 5479 5483 5501 5503 5507 5519
5521 5527 5531 5557 5563 5569 5573 5581 5591 5623 5639 5641
5647 5651 5653 5657 5659 5669 5683 5689 5693 5701 5711 5717
5737 5741 5743 5749 5779 5783 5791 5801 5807 5813 5821 5827
5839 5843 5849 5851 5857 5861 5867 5869 5879 5881 5897 5903
5923 5927 5939 5953 5981 5987
6007 6011 6029 6037 6043 6047 6053 6067 6073 6079 6089 6091
6101 6113 6121 6131 6133 6143 6151 6163 6173 6197 6199 6203
6211 6217 6221 6229 6247 6257 6263 6269 6271 6277 6287 6299
6301 6311 6317 6323 6329 6337 6343 6353 6359 6361 6367 6373
6379 6389 6397 6421 6427 6449 6451 6469 6473 6481 6491 6521
6529 6547 6551 6553 6563 6569 6571 6577 6581 6599 6607 6619
6637 6653 6659 6661 6673 6679 6689 6691 6701 6703 6709 6719
6733 6737 6761 6763 6779 6781 6791 6793 6803 6823 6827 6829
6833 6841 6857 6863 6869 6871 6883 6899 6907 6911 6917 6947
6949 6959 6961 6967 6971 6977 6983 6991 6997
7001 7013 7019 7027 7039 7043 7057 7069 7079 7103 7109 7121
7127 7129 7151 7159 7177 7187 7193 7207 7211 7213 7219 7229
7237 7243 7247 7253 7283 7297 7307 7309 7321 7331 7333 7349
7351 7369 7393 7411 7417 7433 7451 7457 7459 7477 7481 7487
7489 7499 7507 7517 7523 7529 7537 7541 7547 7549 7559 7561
7573 7577 7583 7589 7591 7603 7607 7621 7639 7643 7649 7669
7673 7681 7687 7691 7699 7703 7717 7723 7727 7741 7753 7757
7759 7789 7793 7817 7823 7829 7841 7853 7867 7873 7877 7879
7883 7901 7907 7919 7927 7933 7937 7949 7951 7963 7993
8009 8011 8017 8039 8053 8059 8069 8081 8087 8089 8093 8101
8111 8117 8123 8147 8161 8167 8171 8179 8191 8209 8219 8221
8231 8233 8237 8243 8263 8269 8273 8287 8291 8293 8297 8311
8317 8329 8353 8363 8369 8377 8387 8389 8419 8423 8429 8431
8443 8447 8461 8467 8501 8513 8521 8527 8537 8539 8543 8563
8573 8581 8597 8599 8609 8623 8627 8629 8641 8647 8663 8669
8677 8681 8689 8693 8699 8707 8713 8719 8731 8737 8741 8747
8753 8761 8779 8783 8803 8807 8819 8821 8831 8837 8839 8849
8861 8863 8867 8887 8893 8923 8929 8933 8941 8951 8963 8969
8971 8999
9001 9007 9011 9013 9029 9041 9043 9049 9059 9067 9091 9103
9109 9127 9133 9137 9151 9157 9161 9173 9181 9187 9199 9203
9209 9221 9227 9239 9241 9257 9277 9281 9283 9293 9311 9319
9323 9337 9341 9343 9349 9371 9377 9391 9397 9403 9413 9419
9421 9431 9433 9437 9439 9461 9463 9467 9473 9479 9491 9497
9511 9521 9533 9539 9547 9551 9587 9601 9613 9619 9623 9629
9631 9643 9649 9661 9677 9679 9689 9697 9719 9721 9733 9739
9743 9749 9767 9769 9781 9787 9791 9803 9811 9817 9829 9833
9839 9851 9857 9859 9871 9883 9887 9901 9907 9923 9929 9931
9941 9949 9967 9973
'***************************************************************************
'***************************************************************************
' S N I P P E T S:
C#:
Trace.Assert(false,
"PIL ASSERT. <message>.");
Trace.Assert( xxxx != null,
"PIL ASSERT. xxxx is Nothing...");
Trace.Assert(false,
"PIL ASSERT. <message>.", "<detailed message>.");
Trace.Assert(false,
"Stop!",
"PIL ASSERT. Internal/development assert for stopping execution......");
Trace.Assert(false,
"PIL ASSERT. This should never happen...");
VB.NET:
To be moved to a notes file, included in the project.
Trace.Assert(False, _
"PIL ASSERT. <message>.")
Trace.Assert(Not xxxx Is Nothing, _
"PIL ASSERT. xxxx is Nothing...")
Trace.Assert(False, _
"PIL ASSERT. <message>.", "<detailed message>.")
Trace.Assert(False, _
"Stop!", "PIL ASSERT. Internal/development assert for stopping execution......")
Trace.Assert(False, _
"PIL ASSERT. This should never happen...")
UltraEdit, regular expressions:
Removed file name part from Visual Studio search output:
^[^)]+\):+
Remove leadning space:
menu Format/Space to Tabs (leading)
<replace Tabs with empty>
'***************************************************************************
'Questions:
' 1. "Dim" versus "Private" in structures and classes.
' 2. Comment or question in MascotResultParser.vb?: "Dim scoreInParens As Boolean 'is
' the score in parenthesis because there is a better matching peptide?"
' 3.
'
'***************************************************************************
To move to bug and features document:
1. Tab order in Tools/Options dialog is not in order.
2.
'**************** M I S C S T A R T ***********************************************************
'BBBBBBBBBBBBBBB A marker!
'XAXAXAXAXAXA A temporary marker - can be deleted at any time.
'XBXBXBXBXBXB A temporary marker - can be deleted at any time.
'**************** M I S C E N D ***********************************************************
For clipboard:
<C# and Visual Basic template: see in source code standard document, "srcTemplate.txt">
PERL templates:
SWITCH:
SWITCH:
{
if ($parseState == 0)
{
last SWITCH;
}
if ($parseState == 1)
{
last SWITCH;
}
if ($parseState == 2)
{
last SWITCH;
}
if ($parseState == 3)
{
last SWITCH;
}
die "\nSWITCH fall-through\n\n";
} #SWITCH
For:
my $i;
my $len = 56;
for ($i = 0; $i < $len; $i++)
{
$someChar = substr( $line, $i, 1);
} #for
(Future: make it work with strict)
List processing:
my @outArr;
$#outArr = 560; #Presizing/pre-dimensioning array.
my @words = split /\|/, $FASTAHeader;
my $len = $#words + 1; #Note: no 1 if @words or @$wordsRef.
print "len: $len\n";
my $someWord;
my $idx = 0;
foreach $someWord (@words)
{
if ($someWord ne "")
{
$someWord =~ tr/A-Z/a-z/;
$wordStats{$someWord}++;
push @outArr, $someWord;
}
$idx++;
} #foreach
Associative arrays:
foreach my $someRobot (sort keys( %robots))
{
my $RobotHits = $robots{$someRobot};
} #foreach
By value, numeric:
my $someRobot;
foreach $someRobot (sort { $robots{$a} <=> $robots{$b} } keys %robots)
{
$RobotHits = $robots{$someRobot};
} #foreach
??: sort by value?:
<<<< @frequ = sort { $modHash{$a} <=> $modHash{$b} } keys %modHash;
<<<< foreach $someLen (sort by_number ( keys ( %seqD)))
<<<< foreach $someIndex (sort by_number keys( %distrib))
Files:
open ( FASTAFILE,">$OutPutFileName") || die "Could not open output file $outputFileName";
Regular expressions, etc.:
@items = split( /\\/, $localFile);
Progress:
#Find divider count for constant time.
$dividerCount--;
if ($dividerCount == 0)
{
$currentTime = time();
$timeDiff = $currentTime - $oldTime;
if ($timeDiff > $constantTime)
{
$divider = int (int($divider * 10) / 11);
if ($divider == 0)
{
$divider = 1;
}
print "More than $constantTime secs: New divider: $divider. $currentTime\n";
#die if $peter89++ > 40;
}
else
{
$divider = int (int($divider * 6) / 5) + 1;
}
#print "New divider: $divider. $currentTime\n";
#die if $peter89++ > 40;
$oldTime = $currentTime;
$dividerCount = $divider;
print "$totalIons\n";
}
PERL hints:
Passing Arrays and Hashes by Reference
<http://iis1.cps.unizar.es/Oreilly/perl/cookbook/ch10_06.htm>
'***************************************************************************
TEMP!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!:
pbLCpeak_MouseMove()
DrawBckGrLn()
DrawLCPeak()
'***************************************************************************
Was in FUTURE section:
1. Move class XICwindow to a new file, XICwindow.vb
2. Detect if "MiscOptions.xml" exist. Refuse to start the application
if it exists.
3. Zoom in quantitation window is broken!!!!!!!!!!!!
4. Quantitation mode "No isotope" is broken!!!!!!!!!!!!
Generated by script codePublish.pl at 2009-01-05T15:20:59.