MSQuant report for XYZ proteins and XYZ peptides.

MSQuant, vx.x.x, 2007-xx-xx

<MSQuant@xyz>

$Id: MSQuant report, v 1.0 2007-04-18T16:17:31MSQuant Exp $

2007-04-18T16:17:31

Abstract

xyz

abc

List of Figures

1.1. Identification spectrum for GLFIIDDKGILR.
1.2. Identification spectrum for LVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQK.
1.3. Identification spectrum for TIAQDYGVLKADEGISFR.
1.4. Identification spectrum for GLFIIDDKGILRQITVNDLPVGR.
1.5. Identification spectrum for QITVNDLPVGR.
2.1. Identification spectrum for MKTILSNQTVDIPENVDITLKGR.
2.2. Identification spectrum for MKTILSNQTVDIPENVDITLKGR.
2.3. Identification spectrum for TICSHVQNMIKGVTLGFR.
2.4. Identification spectrum for MKTILSNQTVDIPENVDITLK.
3.1. Identification spectrum for GSLELCDFVTASSFCR.
3.2. Identification spectrum for VGPDVVTDPAFLVTR.
3.3. Identification spectrum for MAQHLQAAVAFVEQGHVR.
4.1. Identification spectrum for HGLLVPNNTTDQELQHIRNSLPDTVQIR.
4.2. Identification spectrum for MCVGNRHGLLVPNNTTDQELQHIR.
4.3. Identification spectrum for QTVADQVLVGSYCVFSNQGGLVHPK.
5.1. Identification spectrum for NKLDHYAIIKFPLTTESAMK.
5.2. Identification spectrum for NKLDHYAIIKFPLTTESAMK.
5.3. Identification spectrum for VNTLIRPDGEKK.
5.4. Identification spectrum for KSAPRR.
5.5. Identification spectrum for LYDIDVAKVNTLIRPDGEKK.

Part: MS2 spectra dump

Chapter 1. Protein 6: IPI00000874

Table of Contents

Protein information
Peptide GLFIIDDKGILR
Peptide LVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQK
Peptide TIAQDYGVLKADEGISFR
Peptide GLFIIDDKGILRQITVNDLPVGR
Peptide QITVNDLPVGR

Protein information

Description: SWISS-PROT:Q06830|REFSEQ_NP:NP_002565;NP_859047;NP_859048|REFSEQ_XP:XP_001393|ENSEMBL:ENSP00000262746 Tax_Id=9606 Peroxiredoxin 1

Total number of peptides (not just validated): 7

Peptide GLFIIDDKGILR

Query number 2754

Observed mass: 453.9377 Th.

Figure 1.1. Identification spectrum for GLFIIDDKGILR.

Peptide LVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQK

Query number 4578

Observed mass: 896.7094 Th.

Figure 1.2. Identification spectrum for LVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQK.

Peptide TIAQDYGVLKADEGISFR

Query number 3881

Observed mass: 661.678 Th.

Figure 1.3. Identification spectrum for TIAQDYGVLKADEGISFR.

Peptide GLFIIDDKGILRQITVNDLPVGR

Query number 4295

Observed mass: 638.871 Th.

Figure 1.4. Identification spectrum for GLFIIDDKGILRQITVNDLPVGR.

Peptide QITVNDLPVGR

Query number 2205

Observed mass: 606.3365 Th.

Figure 1.5. Identification spectrum for QITVNDLPVGR.

Chapter 2. Protein 7: IPI00031691

Table of Contents

Protein information
Peptide MKTILSNQTVDIPENVDITLKGR
Peptide MKTILSNQTVDIPENVDITLKGR
Peptide TICSHVQNMIKGVTLGFR
Peptide MKTILSNQTVDIPENVDITLK

Protein information

Description: SWISS-PROT:P32969|REFSEQ_NP:NP_000652|REFSEQ_XP:XP_370882|ENSEMBL:ENSP00000330879 Tax_Id=9606 60S ribosomal protein L9

Total number of peptides (not just validated): 7

Peptide MKTILSNQTVDIPENVDITLKGR

Query number 4329

Observed mass: 867.8045 Th.

Figure 2.1. Identification spectrum for MKTILSNQTVDIPENVDITLKGR.

Peptide MKTILSNQTVDIPENVDITLKGR

Query number 4338

Observed mass: 876.4735 Th.

Figure 2.2. Identification spectrum for MKTILSNQTVDIPENVDITLKGR.

Peptide TICSHVQNMIKGVTLGFR

Query number 3962

Observed mass: 687.6962 Th.

Figure 2.3. Identification spectrum for TICSHVQNMIKGVTLGFR.

Peptide MKTILSNQTVDIPENVDITLK

Query number 4196

Observed mass: 796.7617 Th.

Figure 2.4. Identification spectrum for MKTILSNQTVDIPENVDITLK.

Chapter 3. Protein 8: IPI00019488

Table of Contents

Protein information
Peptide GSLELCDFVTASSFCR
Peptide VGPDVVTDPAFLVTR
Peptide MAQHLQAAVAFVEQGHVR

Protein information

Description: REFSEQ_NP:NP_060755|TREMBL:Q9NV31;Q96Q46|ENSEMBL:ENSP00000326981 Tax_Id=9606 Hypothetical protein

Total number of peptides (not just validated): 4

Peptide GSLELCDFVTASSFCR

Query number 3752

Observed mass: 924.9175 Th.

Figure 3.1. Identification spectrum for GSLELCDFVTASSFCR.

Peptide VGPDVVTDPAFLVTR

Query number 3300

Observed mass: 793.4322 Th.

Figure 3.2. Identification spectrum for VGPDVVTDPAFLVTR.

Peptide MAQHLQAAVAFVEQGHVR

Query number 3911

Observed mass: 502.7604 Th.

Figure 3.3. Identification spectrum for MAQHLQAAVAFVEQGHVR.

Chapter 4. Protein 9: IPI00010105

Table of Contents

Protein information
Peptide HGLLVPNNTTDQELQHIRNSLPDTVQIR
Peptide MCVGNRHGLLVPNNTTDQELQHIR
Peptide QTVADQVLVGSYCVFSNQGGLVHPK

Protein information

Description: SWISS-PROT:P56537|REFSEQ_NP:NP_002203;NP_852133|TREMBL:Q96TD5|ENSEMBL:ENSP00000246231 Tax_Id=9606 Eukaryotic translation initiation factor 6

Total number of peptides (not just validated): 3

Peptide HGLLVPNNTTDQELQHIRNSLPDTVQIR

Query number 4512

Observed mass: 802.9285 Th.

Figure 4.1. Identification spectrum for HGLLVPNNTTDQELQHIRNSLPDTVQIR.

Peptide MCVGNRHGLLVPNNTTDQELQHIR

Query number 4412

Observed mass: 701.3531 Th.

Figure 4.2. Identification spectrum for MCVGNRHGLLVPNNTTDQELQHIR.

Peptide QTVADQVLVGSYCVFSNQGGLVHPK

Query number 4389

Observed mass: 676.5925 Th.

Figure 4.3. Identification spectrum for QTVADQVLVGSYCVFSNQGGLVHPK.

Chapter 5. Protein 10: IPI00021266

Table of Contents

Protein information
Peptide NKLDHYAIIKFPLTTESAMK
Peptide NKLDHYAIIKFPLTTESAMK
Peptide VNTLIRPDGEKK
Peptide KSAPRR
Peptide LYDIDVAKVNTLIRPDGEKK

Protein information

Description: SWISS-PROT:P29316|REFSEQ_NP:NP_000975|ENSEMBL:ENSP00000339073 Tax_Id=9606 60S ribosomal protein L23a

Total number of peptides (not just validated): 6

Peptide NKLDHYAIIKFPLTTESAMK

Query number 4162

Observed mass: 580.8147 Th.

Figure 5.1. Identification spectrum for NKLDHYAIIKFPLTTESAMK.

Peptide NKLDHYAIIKFPLTTESAMK

Query number 4175

Observed mass: 779.416 Th.

Figure 5.2. Identification spectrum for NKLDHYAIIKFPLTTESAMK.

Peptide VNTLIRPDGEKK

Query number 2785

Observed mass: 685.3932 Th.

Figure 5.3. Identification spectrum for VNTLIRPDGEKK.

Peptide KSAPRR

Query number 396

Observed mass: 357.722 Th.

Figure 5.4. Identification spectrum for KSAPRR.

Peptide LYDIDVAKVNTLIRPDGEKK

Query number 4140

Observed mass: 763.0936 Th.

Figure 5.5. Identification spectrum for LYDIDVAKVNTLIRPDGEKK.